Factsheet for GSMUA_Achr7P15230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	68.88	70.99
GSMUA_Achr9P04020_001	Banana	mitochondrion	74.37	67.57
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	66.36	63.74
PGSC0003DMT400028571	Potato	mitochondrion	61.33	58.39
GSMUA_Achr10P...	Banana	mitochondrion	52.17	57.43
Solyc10g084690.1.1	Tomato	mitochondrion	60.18	57.3
Solyc09g010520.2.1	Tomato	nucleus	60.64	56.75
AT3G53710.2	Thale cress	cytosol	59.27	56.43
PGSC0003DMT400023046	Potato	mitochondrion	60.18	56.32
KRH19707	Soybean	cytosol	61.78	56.13
KRH32302	Soybean	mitochondrion	61.33	55.95
AT2G37550.1	Thale cress	mitochondrion	57.67	55.26
KRG95812	Soybean	endoplasmic reticulum	61.78	55.21
KRH67539	Soybean	mitochondrion	61.1	54.94
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	48.51	53.54
VIT_00s0250g00050.t01	Wine grape	plastid	47.37	48.25
GSMUA_Achr4P28870_001	Banana	cytosol	19.68	21.29
GSMUA_Achr11P...	Banana	cytosol	18.99	20.65
GSMUA_Achr2P18150_001	Banana	cytosol	18.54	20.05
GSMUA_Achr4P21720_001	Banana	cytosol	17.85	19.21
GSMUA_Achr1P08800_001	Banana	cytosol	17.85	16.32
GSMUA_Achr4P23780_001	Banana	cytosol	17.62	16.18
GSMUA_Achr8P07470_001	Banana	cytosol	15.56	14.44
GSMUA_Achr5P26280_001	Banana	cytosol	14.87	13.77
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	14.19	13.03
GSMUA_Achr8P00550_001	Banana	cytosol	13.73	10.66
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	13.96	8.24
GSMUA_Achr4P00060_001	Banana	cytosol	14.42	7.53
GSMUA_Achr11P...	Banana	cytosol	13.96	7.48
GSMUA_Achr1P01960_001	Banana	cytosol	13.27	7.41
GSMUA_Achr7P22550_001	Banana	cytosol	1.14	3.94
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	0.69	1.17

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr7G15230_001	EnsemblPlants:GSMUA_Achr7P15230_001	EnsemblPlants:GSMUA_Achr7T15230_001	InterPro:IPR001164	InterPro:IPR038508	UniProt:M0THR0
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI000294F8C4	SEG:seg	:	:	:

Description

Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:GMGC_GENE;Acc:GSMUA_Achr7G15230_001]

Coordinates

chr7:-:12186868..12194414

Molecular Weight (calculated)

47568.6 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.844

Length

437 amino acids

Sequence
(BLAST)

001: MADGSATRRL REIQSRTGNR TCVDCAQKNP QWASVSYGVF MCLECSGKHR GLGVHISFVR SVTMDAWSEA QLKKMEAGGN DRLNGFLAQC GVPKETDIVV
101: KYNTQAAAVY RDQIAAVADG RPWRDPPVVK ETLGSGARKP PSGRSAGKGG NLAGNGSWDS WDGDDVTSSR STVDIYTRAQ LEASAANKEG FFSTKMAENA
201: SRPEGIPPSQ GGKYVGFGST PPPSAQRNNP QTDVLQDTFS IVSQGLGRLS FIATSAAQSA ANVVQAGTKE LTSKMIEGGY DQKVNETVNV VATKTTEIGQ
301: KTWGIMRGVM AMASQKVEEY AKEGINWNED DWSWKESEKN GPYQKFGQNN KDWNSFEESS ERHQNSVSSW DDWDEKARKK EPKEPGKGTQ SGSESWAGWD
401: DVKDDDGYGT YNHSTPSGNT TNQNRKSGST WTDGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.