Factsheet for VIT_00s0250g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 3
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	49.42	50.0
GSMUA_Achr7P15230_001	Banana	cytosol	48.25	47.37
Zm00001d007856_P001	Maize	cytosol	29.37	46.32
VIT_08s0007g00010.t01	Wine grape	mitochondrion	49.65	45.81
Zm00001d028656_P001	Maize	mitochondrion	48.25	45.59
AT3G53710.2	Thale cress	cytosol	48.72	45.53
AT2G37550.1	Thale cress	mitochondrion	48.25	45.39
GSMUA_Achr9P04020_001	Banana	mitochondrion	50.82	45.32
EER92462	Sorghum	mitochondrion	48.25	45.3
Os03t0278400-01	Rice	plasma membrane	47.55	45.03
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	47.55	44.84
Zm00001d047793_P001	Maize	extracellular, plasma membrane	47.32	44.81
TraesCS4B01G204900.1	Wheat	mitochondrion	47.79	44.18
TraesCS4A01G099400.1	Wheat	mitochondrion	47.55	43.78
CDY26647	Canola	plastid	18.41	43.65
Bra026910.1-P	Field mustard	plastid	18.41	43.65
TraesCS4D01G205800.1	Wheat	mitochondrion	47.32	43.38
CDY16083	Canola	cytosol	23.54	42.8
CDY23645	Canola	cytosol	15.85	41.98
HORVU4Hr1G059060.2	Barley	mitochondrion	46.85	34.9
VIT_02s0012g01330.t01	Wine grape	cytosol	20.05	21.23
VIT_17s0053g00430.t01	Wine grape	cytosol	12.12	20.16
VIT_19s0014g03510.t01	Wine grape	cytosol	17.02	15.27
VIT_00s0404g00040.t01	Wine grape	cytosol	15.38	13.02
VIT_01s0150g00030.t01	Wine grape	cytosol	13.75	7.09
VIT_17s0000g00310.t01	Wine grape	cytosol	13.05	6.77
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	7.93	4.75
Zm00001d032879_P001	Maize	extracellular	1.17	2.3

Protein Annotations

EntrezGene:100266843	wikigene:100266843	MapMan:22.3.4.2	Gene3D:3.30.40.160	EMBL:AM475764	InterPro:ARFGAP/RecO
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	ProteinID:CAN72855	ProteinID:CAN72855.1	ProteinID:CCB48368	ProteinID:CCB48368.1
UniProt:F6H825	EMBL:FN595263	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	EntrezGene:LOC100266843
wikigene:LOC100266843	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000210A0B4	ArrayExpress:VIT_00s0250g00050	EnsemblPlantsGene:VIT_00s0250g00050	EnsemblPlants:VIT_00s0250g00050.t01
RefSeq:XP_002270377	RefSeq:XP_002270377.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:17308971..17312121

Molecular Weight (calculated)

46320.2 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.741

Length

429 amino acids

Sequence
(BLAST)

001: MSSSSSSLAA SASRRLRHLQ SLSSNKTCVD CHQKNPQWAS VSYGIFMCLD CSGKHRGLGV HLSFVRSVTM DSWPDSHLKK MEANSGGNDA LNAFLSARGI
101: PKDTDIPLKY NTNAAALYRE KVQAIAENRR WTEPPVVKES VIKPRSVNSS SEMKVDGVRR NHSVADFRTS GGTNGPSRTW SASDIHEKVQ ASMDGKAEFF
201: ERKVSQNATR PEGLPPSQGG KYVGFGSTGT RPISRSSSQS DVISDAVSAG FGLVSMVASS AVQSAANAVQ ASTKELTSKV RDAGYDEKVS VVASKTTELG
301: QRTWGIVKDV MALATLKVEE YTGDGVESKS GQENNDSFGQ SPGESKWNSD NANAGEDPKG SQWNWNDGNF GQYHAESKWN SNNANAGDCP TQNKWNGSPH
401: KGWDDWGPDS PVAAKPNKSK SEEVWVGWD

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.