CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028656_P001	Maize	mitochondrion	95.84	96.48
Zm00001d047793_P001	Maize	extracellular, plasma membrane	92.34	93.16
Os03t0278400-01	Rice	plasma membrane	87.75	88.52
TraesCS4B01G204900.1	Wheat	mitochondrion	83.15	81.9
TraesCS4A01G099400.1	Wheat	mitochondrion	83.37	81.76
TraesCS4D01G205800.1	Wheat	mitochondrion	83.37	81.41
HORVU4Hr1G059060.2	Barley	mitochondrion	83.37	66.15
AT3G53710.2	Thale cress	cytosol	60.18	59.91
KRH67539	Soybean	mitochondrion	62.58	58.85
Solyc10g084690.1.1	Tomato	mitochondrion	58.86	58.61
PGSC0003DMT400023046	Potato	mitochondrion	59.74	58.46
Solyc09g010520.2.1	Tomato	nucleus	59.52	58.24
GSMUA_Achr10P...	Banana	mitochondrion	50.55	58.19
AT2G37550.1	Thale cress	mitochondrion	57.99	58.11
KRG95812	Soybean	endoplasmic reticulum	62.14	58.08
PGSC0003DMT400028571	Potato	mitochondrion	58.21	57.95
KRH32302	Soybean	mitochondrion	59.3	56.58
KRH19707	Soybean	cytosol	59.52	56.55
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	47.92	55.3
CDY23645	Canola	cytosol	19.26	54.32
CDY16083	Canola	cytosol	27.13	52.54
VIT_00s0250g00050.t01	Wine grape	plastid	45.3	48.25
Bra026910.1-P	Field mustard	plastid	19.04	48.07
CDY26647	Canola	plastid	19.04	48.07
EER90493	Sorghum	cytosol	19.69	21.63
EER91883	Sorghum	cytosol	18.6	20.88
EER99548	Sorghum	cytosol	18.16	17.55
EER99172	Sorghum	cytosol	14.66	8.01
OQU80812	Sorghum	cytosol	13.35	7.4
OQU85359	Sorghum	cytosol, mitochondrion, plastid	11.38	6.2

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	EntrezGene:8081491	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
UniProt:C5WPD5	EnsemblPlants:EER92462	ProteinID:EER92462	ProteinID:EER92462.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35
SMART:SM00105	EnsemblPlantsGene:SORBI_3001G417800	SUPFAM:SSF57863	unigene:Sbi.7450	UniParc:UPI0001A82C7D	RefSeq:XP_002465464.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:69877775..69880762

Molecular Weight (calculated)

49190.1 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.883

Length

457 amino acids

Sequence
(BLAST)

001: MASTAARRLR ELQAQAGNKT CVDCAQRNPQ WASVSYGVFM CLECSGKHRG LGVHISFVRS VTMDSWTEAQ LRKMEAGGND RLNAFLTARG VTKETPHVAK
101: YNSNAAAVYR DRIAALAEGK PWTDPPVVKE TPGSGAPAAA RKPPVHTSAA SASGGGGWDD WDDDFRPDMR RNQSVGSFAA AGGQSGRQPP RSKSTQDMYT
201: RQQLEASAAN KEDFFARRMA ENESKPEGIP PSQGGKYVGF GSSPAPSANR NGGAAQGDVM QVVSQGFGRL SLVAASAAQS AASVVQVGTK EIQSKMRDGG
301: YDQKVNETVS VVANKTAEIG SRTWGIMRGV MALASQKVEE YAKEGGMSGW GDDWQRSEQN SEPYQRFEHE TNGNSWNSSQ NSSSKNNNSS SWDDWDDQGK
401: KDEPAKPHQS SDSWAGWDDG KDDGFDSPSY NNHSTPNKGS NQNGTTGGTF WTEGGFR

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.