Factsheet for Zm00001d028656_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92462	Sorghum	mitochondrion	96.48	95.84
Zm00001d047793_P001	Maize	extracellular, plasma membrane	92.73	92.94
Zm00001d007856_P001	Maize	cytosol	52.64	87.87
Os03t0278400-01	Rice	plasma membrane	87.44	87.64
TraesCS4A01G099400.1	Wheat	mitochondrion	84.58	82.4
TraesCS4B01G204900.1	Wheat	mitochondrion	84.14	82.33
TraesCS4D01G205800.1	Wheat	mitochondrion	84.58	82.05
HORVU4Hr1G059060.2	Barley	mitochondrion	84.14	66.32
AT3G53710.2	Thale cress	cytosol	59.91	59.26
PGSC0003DMT400023046	Potato	mitochondrion	59.91	58.24
Solyc09g010520.2.1	Tomato	nucleus	59.69	58.03
KRH67539	Soybean	mitochondrion	61.89	57.82
Solyc10g084690.1.1	Tomato	mitochondrion	58.37	57.73
AT2G37550.1	Thale cress	mitochondrion	57.71	57.46
GSMUA_Achr10P...	Banana	mitochondrion	50.22	57.43
PGSC0003DMT400028571	Potato	mitochondrion	57.93	57.3
KRG95812	Soybean	endoplasmic reticulum	61.23	56.85
KRH19707	Soybean	cytosol	59.03	55.72
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	48.46	55.56
KRH32302	Soybean	mitochondrion	58.59	55.53
CDY23645	Canola	cytosol	18.72	52.47
CDY16083	Canola	cytosol	26.65	51.27
VIT_00s0250g00050.t01	Wine grape	plastid	45.59	48.25
CDY26647	Canola	plastid	18.94	47.51
Bra026910.1-P	Field mustard	plastid	18.94	47.51
Zm00001d009353_P001	Maize	cytosol	6.61	24.79
Zm00001d034885_P002	Maize	cytosol	19.16	20.91
Zm00001d015981_P001	Maize	peroxisome	6.83	20.26
Zm00001d012827_P002	Maize	cytosol	18.72	20.19
Zm00001d004245_P003	Maize	cytosol	8.15	19.27
Zm00001d047020_P002	Maize	cytosol	18.06	18.64
Zm00001d021802_P001	Maize	cytosol	18.5	17.54
Zm00001d030031_P002	Maize	plastid	17.84	16.77
Zm00001d006602_P001	Maize	cytosol	17.18	15.73
Zm00001d046873_P001	Maize	cytosol, plastid	12.56	10.71
Zm00001d016547_P001	Maize	cytosol, plastid	12.56	10.71
Zm00001d051030_P001	Maize	cytosol, plastid	12.56	10.71
Zm00001d015278_P001	Maize	mitochondrion	7.27	9.82
Zm00001d049871_P001	Maize	cytosol	3.52	8.38
Zm00001d023982_P001	Maize	cytosol	6.83	7.97
Zm00001d021087_P003	Maize	cytosol	13.44	7.29
Zm00001d049872_P001	Maize	cytosol	8.81	7.29
Zm00001d031667_P006	Maize	cytosol	13.0	7.17
Zm00001d051187_P009	Maize	plastid	10.13	6.52
Zm00001d051188_P001	Maize	cytosol	1.54	5.3
Zm00001d016932_P001	Maize	endoplasmic reticulum	0.88	2.19
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	0.88	2.09
Zm00001d032879_P001	Maize	extracellular	0.88	1.84

Protein Annotations

EntrezGene:103634469	MapMan:22.3.4.2	Gene3D:3.30.40.160	UniProt:A0A1D6JYA9	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	ProteinID:ONL96650.1	PFAM:PF01412
PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863
UniParc:UPI000221EC47	EnsemblPlantsGene:Zm00001d028656	EnsemblPlants:Zm00001d028656_P001	EnsemblPlants:Zm00001d028656_T001	SEG:seg	:

Description

DNA binding protein

Coordinates

chr1:-:42051353..42054601

Molecular Weight (calculated)

48831.7 Da

IEP (calculated)

7.238

GRAVY (calculated)

-0.898

Length

454 amino acids

Sequence
(BLAST)

001: MASTAARRLR ELQAQTGNKT CVDCAQRNPQ WASVSYGVFM CLECSGKHRG LGVHISFVRS VTMDSWTEAQ LRKMEAGGND RLNAFLTARG VPKETPHVAK
101: YNSNAAAAYR DRIAALAEGK PWTDPPVVKE TPGSGAPAPA RKPPVHTSAA SGGGGWDDWD DDFRPDMRRN QSVGSFAAAG AQSGRQPPRS KSTQDMYTRQ
201: QLEASAANKE DFFARRMAEN ESKPDGIPPS QGGKYVGFGS SPPPSANRNG GAAQGDVMQV VSQGFGRLSL VAASAAQSAA SAVQVGTKEI QSKMRDGGYD
301: QKVNETVSVV ANKTAEIGSR TWGIMRGVMA LASQKVEEYA KEGGVGGWGE DWQHSEQKSE PYQRFEHETN GNSWNSSQNS SSKNNSSSWD DWDDPGKKDE
401: PAKPHQSSDS WAGWDDGKDD GFDSPSYNNH STSNKGSNQN GTSGGTFWTE GGFR

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.