Factsheet for Zm00001d015278_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004245_P003
Zm00001d009353_P001
Zm00001d009504_P002
Zm00001d013705_P001
Zm00001d013996_P003
Zm00001d015278_P001
Zm00001d015981_P001
Zm00001d021087_P003
Zm00001d023982_P001
Zm00001d030661_P001
Zm00001d031667_P006
Zm00001d033283_P001
Zm00001d038955_P001
Zm00001d039404_P001
Zm00001d045530_P001
Zm00001d049871_P001
Zm00001d049872_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	Zm00001d013705_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d030661_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d033283_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d004245_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d009353_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015278_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015981_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d021087_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d023982_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d031667_P006	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049871_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049872_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d013996_P003	AT5G26980.1	15743878
AT5G13300.1	Zm00001d039404_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d045530_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d009504_P002	AT5G42080.1	15923323
AT5G13300.1	Zm00001d038955_P001	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009353_P001	Maize	cytosol	22.92	63.64
Zm00001d015981_P001	Maize	peroxisome	23.81	52.29
Zm00001d004245_P003	Maize	cytosol	26.79	46.88
Solyc12g042180.1.1	Tomato	cytosol	22.92	34.38
Zm00001d049872_P001	Maize	cytosol	47.62	29.14
Zm00001d023982_P001	Maize	cytosol	28.27	24.42
CDX70496	Canola	cytosol	39.29	23.87
OQU80812	Sorghum	cytosol	56.55	23.06
Zm00001d031667_P006	Maize	cytosol	56.25	22.96
TraesCS7A01G263800.2	Wheat	cytosol	54.76	22.36
HORVU7Hr1G055220.21	Barley	cytosol	54.46	22.02
Os08t0537600-01	Rice	plasma membrane	53.87	21.78
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	54.76	21.72
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	54.76	21.72
GSMUA_Achr11P...	Banana	cytosol	51.79	21.32
PGSC0003DMT400005756	Potato	cytosol	51.79	21.3
Zm00001d021087_P003	Maize	cytosol	52.98	21.27
CDY09784	Canola	cytosol	50.3	21.18
Solyc05g023750.2.1	Tomato	cytosol	51.19	21.05
VIT_01s0150g00030.t01	Wine grape	cytosol	51.79	20.91
GSMUA_Achr4P00060_001	Banana	cytosol	51.79	20.79
KRH45201	Soybean	cytosol	50.6	20.66
CDX69650	Canola	cytosol	50.6	20.58
Bra008838.1-P	Field mustard	cytosol	50.6	20.58
AT5G13300.1	Thale cress	cytosol	50.6	20.56
CDX78515	Canola	cytosol	50.0	20.22
KRH01512	Soybean	cytosol	50.0	20.02
Bra006193.1-P	Field mustard	cytosol	47.92	19.8
AT5G61980.1	Thale cress	cytosol	47.62	19.32
VIT_17s0000g00310.t01	Wine grape	cytosol	47.32	19.23
Solyc03g118260.1.1	Tomato	cytosol	45.24	19.0
KRH59741	Soybean	cytosol	44.64	18.75
KRH63858	Soybean	cytosol	43.45	18.6
Zm00001d051187_P009	Maize	plastid	38.99	18.58
Zm00001d016932_P001	Maize	endoplasmic reticulum	10.12	18.58
CDY00242	Canola	cytosol	43.45	18.55
Bra029295.1-P	Field mustard	cytosol	47.32	18.45
CDY30689	Canola	cytosol	47.32	18.45
CDX86943	Canola	cytosol	38.99	18.4
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	40.48	18.38
Bra010046.1-P	Field mustard	cytosol	41.96	17.83
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	9.52	16.75
KRH54108	Soybean	cytosol	36.61	16.67
Zm00001d032879_P001	Maize	extracellular	9.52	14.75
Solyc12g042170.1.1	Tomato	cytosol	22.02	13.65
PGSC0003DMT400036762	Potato	cytosol	23.21	13.36
CDY53619	Canola	cytosol	11.9	11.87
Zm00001d021802_P001	Maize	cytosol	14.58	10.23
Zm00001d006602_P001	Maize	cytosol	14.58	9.88
Zm00001d012827_P002	Maize	cytosol	10.12	8.08
Zm00001d030031_P002	Maize	plastid	11.61	8.07
Zm00001d047020_P002	Maize	cytosol	10.42	7.95
Zm00001d034885_P002	Maize	cytosol	9.82	7.93
Zm00001d007856_P001	Maize	cytosol	6.25	7.72
Zm00001d047793_P001	Maize	extracellular, plasma membrane	9.82	7.28
Zm00001d028656_P001	Maize	mitochondrion	9.82	7.27
Zm00001d016547_P001	Maize	cytosol, plastid	10.12	6.39
Zm00001d046873_P001	Maize	cytosol, plastid	10.12	6.39
Zm00001d051030_P001	Maize	cytosol, plastid	10.12	6.39
Zm00001d049871_P001	Maize	cytosol	1.49	2.62
CDY08879	Canola	cytosol	0.89	0.95
Zm00001d051188_P001	Maize	cytosol	0.3	0.76

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.1040	Gene3D:3.30.40.160	MapMan:50.2.7	UniProt:A0A1D6H0Z0	InterPro:AH/BAR_dom_sf
ProteinID:AQK68561.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR027267	InterPro:IPR038508	InterPro:Kinase-like_dom_sf	PFAM:PF01412	PFAM:PF16746	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF242	SMART:SM00105	SUPFAM:SSF103657	SUPFAM:SSF56112
SUPFAM:SSF57863	UniParc:UPI000843B77A	EnsemblPlantsGene:Zm00001d015278	EnsemblPlants:Zm00001d015278_P001	EnsemblPlants:Zm00001d015278_T001	:

Description

ADP-ribosylation factor GTPase-activating protein AGD3

Coordinates

chr5:+:82495698..82511830

Molecular Weight (calculated)

38077.9 Da

IEP (calculated)

5.554

GRAVY (calculated)

-0.404

Length

336 amino acids

Sequence
(BLAST)

001: MRGLSGFVET RQQLLSLKPN HRMNWIGFAV AHHLNSDSSK AVEVLEAYEG TLEDDYPPEN ERYEHNEMLL YKGDQLFPPD GIGIGIVISP QGIFCLVLRA
101: DPNFDDSPWQ SVSPEAKDFV KRLLNKDYRK RMTAAQALSF GNNQELHNAR SSFEQARFNL VTSLSHVEAT KRYEFLEAVS ATMDSHLRYF KQGYELLHQM
201: EPYINQRHTS SQNQHETKKP IDLLRKVDGN NMCADCGASE PDWASLNLGA LLCIECSGVH RNLGVHISKV RSLTLDVGVW EPSVINLFQS LGNMFVNSIW
301: EETLPDDNSS ADGSDTSQYL SVSKPNLFMR ILVYFV

Best Arabidopsis Sequence Match ( AT5G61980.1 )
(BLAST)

001: MHFAKLDDSP MFRQQMQSME ESAELLRLRC LRFYKGCRKY TEGLGEGYDA DIGFVNALES FGGGHNDPVC VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLSDRLLQF VNGDVHEVKE ARKRFDKATI TYDQAREKYL SLRKSTRLDV AATIEEDLHS ARTTFEQARF HLVSALSNAE SKKRFEFLEA VSGTMDAHLR
201: FFKQGYELLH QMEPFINQVL AYAHQSRECA NYEMASLNER MQEYQRQVDR ETRNSCVSPT GDGMRHNSRN SQKVIEAVMQ SAAKGKVQTI RQGYLSKRSS
301: NLRGDWKRRF FILDSRGMLY YYRKPWNWSS GNGSRSVVHR NMASENSPGL LSRWLSSHYH GGVHDEKPVA RHTVNLLTST IKVDADQTDL RFCFRIISPT
401: KVYTLQAENA QDQMDWIEKI TGVIASLLSF QTPERAIMRL STVDGGDTFS ASDSGSLADP YDIEQAESGE STVEHPMTGG NRSRFSGCLQ QHDMVKTEKP
501: IDVLTRVLGN ERCADCGAPE PDWASLNLGV LICIECSGIH RNLGVHISKV RSLTLDVKVW EPSVLTLFQS LGNVYVNSVW EELLNSESRT SSASRSSGTP
601: KSDRPRKLLV RKPGFNDPIS VKELFIHAKY SERIFVRKAI DSQHFQAVFQ EIWENVRAND KKSVYRHIVC SEADVNALRG QASYTVSLPL SKMMQMEETL
701: EAKFKSIEEE FQENPAGYSN SRGDGESMVR EETSNDCSLL HLACLSADIG MVELLLQYGA KINATDSKGR TPLHHCIISR RYAIARLLLM RGGDPNAVDK
801: DSNIPVKYAS QTDLNDSELI ALLTDSKR

Arabidopsis Description

AGD1ADP-ribosylation factor GTPase-activating protein AGD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.