CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67529
CDX69650
CDX93914
CDX99702
CDY09784
CDY13364
CDY27661
CDY53717

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	CDX93914	AT3G63300.1	19363154
AT5G13300.1	CDY53717	AT3G63300.1	19363154
AT5G13300.1	CDX69650	AT5G13300.1	15743878
AT5G13300.1	CDY09784	AT5G13300.1	15743878
AT5G13300.1	CDX67529	AT5G42080.1	15923323
AT5G13300.1	CDX99702	AT5G42080.1	15923323
AT5G13300.1	CDY13364	AT5G42080.1	15923323
AT5G13300.1	CDY27661	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69650	Canola	cytosol	99.75	96.37
Bra008838.1-P	Field mustard	cytosol	99.5	96.13
CDX78515	Canola	cytosol	94.99	91.22
CDX70496	Canola	cytosol	63.03	90.96
AT5G13300.1	Thale cress	cytosol	92.98	89.72
CDY53619	Canola	cytosol	34.34	81.31
VIT_01s0150g00030.t01	Wine grape	cytosol	80.08	76.8
PGSC0003DMT400005756	Potato	cytosol	78.2	76.38
KRH45201	Soybean	cytosol	78.7	76.31
KRH01512	Soybean	cytosol	77.32	73.54
Zm00001d049872_P001	Maize	cytosol	49.12	71.4
GSMUA_Achr11P...	Banana	cytosol	71.05	69.49
TraesCS5A01G293000.1	Wheat	cytosol	71.18	68.35
TraesCS5B01G292200.1	Wheat	cytosol	71.05	67.99
TraesCS5D01G300300.2	Wheat	cytosol	71.05	67.5
Os09t0510700-01	Rice	cytosol	70.55	67.34
GSMUA_Achr4P00060_001	Banana	cytosol	70.3	67.03
EER99172	Sorghum	cytosol	70.05	66.87
HORVU5Hr1G077570.15	Barley	cytosol	69.8	66.55
Zm00001d021087_P003	Maize	cytosol	69.8	66.55
TraesCS7A01G263800.2	Wheat	cytosol	67.17	65.13
OQU80812	Sorghum	cytosol	67.17	65.05
HORVU7Hr1G055220.21	Barley	cytosol	66.92	64.26
Zm00001d031667_P006	Maize	cytosol	66.04	64.03
Os08t0537600-01	Rice	plasma membrane	66.54	63.9
CDY00242	Canola	cytosol	62.78	63.66
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	66.54	62.69
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	66.54	62.69
CDX86944	Canola	cytosol	10.15	61.83
CDY30689	Canola	cytosol	65.91	61.02
CDX86943	Canola	cytosol	54.39	60.96
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	55.76	60.14
Zm00001d009353_P001	Maize	cytosol	8.27	54.55
Zm00001d015981_P001	Maize	peroxisome	9.65	50.33
Zm00001d015278_P001	Maize	mitochondrion	21.18	50.3
CDY71222	Canola	cytosol	5.89	48.96
CDX97917	Canola	cytosol	44.49	46.16
CDY19326	Canola	cytosol	44.24	45.9
Zm00001d004245_P003	Maize	cytosol	10.9	45.31
Zm00001d049871_P001	Maize	cytosol	10.78	45.03
CDY40502	Canola	cytosol	42.98	44.95
CDY54764	Canola	cytosol	41.73	43.7
Zm00001d023982_P001	Maize	cytosol	15.16	31.11
CDX95838	Canola	cytosol	8.4	26.38
CDX92147	Canola	cytosol	7.77	24.41
CDY63834	Canola	cytosol	10.78	18.14
CDY43044	Canola	cytosol	10.53	17.57
CDY43831	Canola	cytosol	10.4	17.22
CDY52243	Canola	cytosol	10.15	17.2
CDX78809	Canola	cytosol	7.89	16.11
CDY58500	Canola	cytosol	8.02	15.96
CDX77687	Canola	cytosol	8.02	15.92
CDY44506	Canola	cytosol	7.89	15.91
CDY64205	Canola	endoplasmic reticulum	9.77	15.82
CDX78196	Canola	cytosol	8.65	15.51
CDY28774	Canola	endoplasmic reticulum, plasma membrane	9.52	15.42
CDY18435	Canola	cytosol	8.15	15.4
CDX76193	Canola	cytosol	8.65	15.3
CDX74953	Canola	cytosol	8.65	15.27
CDX73533	Canola	cytosol	8.52	15.25
CDY07784	Canola	mitochondrion	8.27	15.24
CDY69342	Canola	mitochondrion	8.27	15.07
CDX79739	Canola	mitochondrion	8.52	15.01
CDY30849	Canola	cytosol	8.4	14.96
CDX90439	Canola	cytosol	7.52	14.63
CDY01499	Canola	cytosol	7.27	14.25
CDY59045	Canola	cytosol	7.02	14.25
CDY23645	Canola	cytosol	1.75	8.64
CDY16083	Canola	cytosol	2.38	8.05
CDY26647	Canola	plastid	1.5	6.63
CDY08879	Canola	cytosol	2.13	5.4

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078F9U4	UniProt:A0A078F9U4	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlants:CDY09784	ProteinID:CDY09784	ProteinID:CDY09784.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00031486001	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683
InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796
PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248
SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0004EEA3ED
SEG:seg	:	:	:	:	:

Description

BnaC09g43770DBnaC09g43770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9U4]

Coordinates

chrLK031999:-:79435..84597

Molecular Weight (calculated)

88958.0 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.471

Length

798 amino acids

Sequence
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEKARF NLVTTLSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALDEK MQEYKRQVDR ESRYGSNSAN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGGGVHDE KSVARHTVNL LTSTIKVDAD QSDLRFCFRI
401: ISPSKNYTLQ AESALDQMDW IEKITGVIAS LLSSQVPGSP MESGHHRSAS ESSSYESSEY DHPTTDEFPI DVLRKVFGND KCADCGAPEP DWASLNLGVL
501: VCIECSGVHR NLGVHISKVR SLTLDVKVWE PSVITLFQAL GNNFANTVWE ELLHSRSAFH VDPGLTGSDK SRVLVTGKPS YADMISVKEK YIQAKYAEKL
601: FVRRSRDCDF PQSVAQQMWD AVSANDKKSV YRLIVNGEAD VNAVYDQPSS SSSLTLSRVM LIPERPPTRE DVLLKLRNEL LDRTSSGFSS SIPPEETGGC
701: SLLHCACEKA DIGMVELLLQ YGANVNATDS SGQTPLHYCI LRGKAVVARL LLTRGADTEA VNGEGKTALD IAAESKFTDS EVLSLLSEAA NGYNHRQC

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.