CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039812.1-P	Field mustard	cytosol	100.0	100.0
CDY30849	Canola	cytosol	96.45	97.1
CDX78196	Canola	cytosol	85.59	86.74
CDX73533	Canola	cytosol	84.26	85.2
AT3G53710.2	Thale cress	cytosol	85.14	83.66
CDY07784	Canola	mitochondrion	71.84	74.83
CDX79739	Canola	mitochondrion	74.06	73.73
CDY69342	Canola	mitochondrion	70.07	72.15
CDX74953	Canola	cytosol	71.84	71.68
CDY23645	Canola	cytosol	25.06	69.75
CDY16083	Canola	cytosol	34.81	66.53
CDY18435	Canola	cytosol	58.54	62.56
CDY26647	Canola	plastid	24.61	61.33
CDY71222	Canola	cytosol	8.2	38.54
CDX95838	Canola	cytosol	12.64	22.44
CDY01499	Canola	cytosol	20.18	22.36
CDX78809	Canola	cytosol	19.29	22.25
CDY44506	Canola	cytosol	19.51	22.22
CDX90439	Canola	cytosol	20.18	22.2
CDX92147	Canola	cytosol	12.42	22.05
CDX77687	Canola	cytosol	19.51	21.89
CDY58500	Canola	cytosol	19.07	21.45
CDY59045	Canola	cytosol	17.52	20.1
CDY63834	Canola	cytosol	18.85	17.93
CDY43831	Canola	cytosol	18.85	17.63
CDY43044	Canola	cytosol	18.63	17.57
CDY52243	Canola	cytosol	17.96	17.2
CDY64205	Canola	endoplasmic reticulum	18.4	16.84
CDY28774	Canola	endoplasmic reticulum, plasma membrane	17.74	16.23
CDY53619	Canola	cytosol	9.76	13.06
CDY08879	Canola	cytosol	7.76	11.11
CDX86943	Canola	cytosol	13.75	8.71
CDY09784	Canola	cytosol	15.3	8.65
CDX78515	Canola	cytosol	15.74	8.54
CDX69650	Canola	cytosol	15.3	8.35
CDY00242	Canola	cytosol	13.75	7.88
CDX97917	Canola	cytosol	13.3	7.8
CDY19326	Canola	cytosol	13.08	7.67
CDY30689	Canola	cytosol	14.19	7.42
CDY54764	Canola	cytosol	11.75	6.96
CDY40502	Canola	cytosol	11.75	6.95
CDX70496	Canola	cytosol	5.76	4.7
CDX86944	Canola	cytosol	0.44	1.53

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078CMA4	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlants:CDX76193	ProteinID:CDX76193	ProteinID:CDX76193.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00126498001	InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0002545278
SEG:seg	:	:	:	:	:

Description

BnaA04g04570D

Coordinates

chrLK031806:+:1727571..1729900

Molecular Weight (calculated)

48052.9 Da

IEP (calculated)

7.652

GRAVY (calculated)

-0.818

Length

451 amino acids

Sequence
(BLAST)

001: MAAARQLRAL QSHPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMEAGGNARL NSFLSQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGKAW SDPPVVKEGV HKKPPLAAQG GGGGGWDSWG NEDSYRSDMR RNQSENDFRG SGGGGGGGGA RAKSKSSEDV YTRSQLEASA
201: AGKESFFARR MAENESKPEG LPPSQGGKYV GFGSSSGPAP RSNQQDDVFS VVSQGFGRLS MVAASAAQSA ASVVQTGTKE FTSKVKEGGY DHKVTETVNV
301: VATKTTEIGH RTWGIMKGVM AIATQKVGEY TKEGTTSWNQ HNESESNGYY QNYGSGNKEA NPSAGGGGSQ LPSTGHYNNS QKSNSWDDWG ENETPKKNEA
401: VAPKGSSASN DDGGWTGWDD GFDGHYQSAD DKKSVGHNGK PDTAWTGGGF L

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.