CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016932_P001	Maize	endoplasmic reticulum	47.33	33.88
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	47.33	32.46
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	49.62	25.29
CDX70496	Canola	cytosol	60.31	14.29
CDY00242	Canola	cytosol	80.92	13.47
CDY30689	Canola	cytosol	72.52	11.02
CDY09784	Canola	cytosol	61.83	10.15
CDX78515	Canola	cytosol	62.6	9.87
CDX69650	Canola	cytosol	61.83	9.81
CDY40502	Canola	cytosol	36.64	6.29
CDY54764	Canola	cytosol	35.88	6.17
CDY19326	Canola	cytosol	35.88	6.11
CDX97917	Canola	cytosol	35.88	6.11
CDX86943	Canola	cytosol	15.27	2.81
CDY71222	Canola	cytosol	1.53	2.08
CDY53619	Canola	cytosol	5.34	2.08
GSMUA_Achr8P00550_001	Banana	cytosol	6.11	1.42
CDY01499	Canola	cytosol	3.05	0.98
CDX90439	Canola	cytosol	3.05	0.98
CDY08879	Canola	cytosol	2.29	0.95
CDY16083	Canola	cytosol	1.53	0.85
CDX78196	Canola	cytosol	2.29	0.67
CDX73533	Canola	cytosol	2.29	0.67
CDY63834	Canola	cytosol	2.29	0.63
CDY43044	Canola	cytosol	2.29	0.63
CDY23645	Canola	cytosol	0.76	0.62
CDY26647	Canola	plastid	0.76	0.55
CDX78809	Canola	cytosol	1.53	0.51
CDY59045	Canola	cytosol	1.53	0.51
CDY44506	Canola	cytosol	1.53	0.51
CDY58500	Canola	cytosol	1.53	0.5
CDX77687	Canola	cytosol	1.53	0.5
CDY18435	Canola	cytosol	1.53	0.47
CDY07784	Canola	mitochondrion	1.53	0.46
CDY69342	Canola	mitochondrion	1.53	0.46
CDY30849	Canola	cytosol	1.53	0.45
CDX76193	Canola	cytosol	1.53	0.44
CDX74953	Canola	cytosol	1.53	0.44
CDX79739	Canola	mitochondrion	1.53	0.44
CDY52243	Canola	cytosol	1.53	0.42
CDY43831	Canola	cytosol	1.53	0.41
CDX95838	Canola	cytosol	0.76	0.39
CDX92147	Canola	cytosol	0.76	0.39
CDY64205	Canola	endoplasmic reticulum	0.76	0.2
CDY28774	Canola	endoplasmic reticulum, plasma membrane	0.76	0.2

Protein Annotations

EnsemblPlants:CDX86944	EnsemblPlantsGene:GSBRNA2T00145761001	Gene3D:1.20.1270.60	InterPro:AH/BAR_dom_sf	InterPro:IPR027267	PANTHER:PTHR23180
PANTHER:PTHR23180:SF373	ProteinID:CDX86944	ProteinID:CDX86944.1	SEG:seg	SUPFAM:SSF103657	UniParc:UPI0004EE7E0B
MapMan:35.1	:	:	:	:	:

Description

BnaC03g52140D

Coordinates

chrLK031848:-:658389..659443

Molecular Weight (calculated)

14986.2 Da

IEP (calculated)

4.987

GRAVY (calculated)

-0.259

Length

131 amino acids

Sequence
(BLAST)

001: MHFAKLDDSP MFRQQMQCME ESADLLGMRC LREGLGEGYD GDIDFVNALE SFGGGHNDPI GVAFGGPVMT KFTVALREIG TYKEVLRSEV LLVRMRELLR
101: VYFSGMNNMK NIERESRSQN IRENERIVFL I

Best Arabidopsis Sequence Match ( AT5G61980.1 )
(BLAST)

001: MHFAKLDDSP MFRQQMQSME ESAELLRLRC LRFYKGCRKY TEGLGEGYDA DIGFVNALES FGGGHNDPVC VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLSDRLLQF VNGDVHEVKE ARKRFDKATI TYDQAREKYL SLRKSTRLDV AATIEEDLHS ARTTFEQARF HLVSALSNAE SKKRFEFLEA VSGTMDAHLR
201: FFKQGYELLH QMEPFINQVL AYAHQSRECA NYEMASLNER MQEYQRQVDR ETRNSCVSPT GDGMRHNSRN SQKVIEAVMQ SAAKGKVQTI RQGYLSKRSS
301: NLRGDWKRRF FILDSRGMLY YYRKPWNWSS GNGSRSVVHR NMASENSPGL LSRWLSSHYH GGVHDEKPVA RHTVNLLTST IKVDADQTDL RFCFRIISPT
401: KVYTLQAENA QDQMDWIEKI TGVIASLLSF QTPERAIMRL STVDGGDTFS ASDSGSLADP YDIEQAESGE STVEHPMTGG NRSRFSGCLQ QHDMVKTEKP
501: IDVLTRVLGN ERCADCGAPE PDWASLNLGV LICIECSGIH RNLGVHISKV RSLTLDVKVW EPSVLTLFQS LGNVYVNSVW EELLNSESRT SSASRSSGTP
601: KSDRPRKLLV RKPGFNDPIS VKELFIHAKY SERIFVRKAI DSQHFQAVFQ EIWENVRAND KKSVYRHIVC SEADVNALRG QASYTVSLPL SKMMQMEETL
701: EAKFKSIEEE FQENPAGYSN SRGDGESMVR EETSNDCSLL HLACLSADIG MVELLLQYGA KINATDSKGR TPLHHCIISR RYAIARLLLM RGGDPNAVDK
801: DSNIPVKYAS QTDLNDSELI ALLTDSKR

Arabidopsis Description

AGD1ADP-ribosylation factor GTPase-activating protein AGD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.