CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07784	Canola	mitochondrion	92.05	96.3
AT2G37550.1	Thale cress	mitochondrion	88.08	87.5
CDY23645	Canola	cytosol	30.02	83.95
CDX74953	Canola	cytosol	81.68	81.86
CDY69342	Canola	mitochondrion	78.15	80.82
CDY16083	Canola	cytosol	41.28	79.24
CDX73533	Canola	cytosol	74.61	75.78
CDX78196	Canola	cytosol	74.39	75.73
CDY30849	Canola	cytosol	74.39	75.22
CDX76193	Canola	cytosol	73.73	74.06
CDY26647	Canola	plastid	29.58	74.03
CDY18435	Canola	cytosol	64.9	69.67
CDY71222	Canola	cytosol	8.17	38.54
CDX95838	Canola	cytosol	13.69	24.41
CDX92147	Canola	cytosol	13.24	23.62
CDY01499	Canola	cytosol	20.75	23.1
CDY44506	Canola	cytosol	20.09	22.98
CDX90439	Canola	cytosol	20.75	22.93
CDX78809	Canola	cytosol	19.43	22.51
CDX77687	Canola	cytosol	19.43	21.89
CDY58500	Canola	cytosol	18.98	21.45
CDY59045	Canola	cytosol	16.78	19.34
CDY43044	Canola	cytosol	19.87	18.83
CDY43831	Canola	cytosol	19.87	18.67
CDY63834	Canola	cytosol	19.21	18.35
CDY64205	Canola	endoplasmic reticulum	18.76	17.24
CDY52243	Canola	cytosol	17.88	17.2
CDY28774	Canola	endoplasmic reticulum, plasma membrane	17.44	16.02
CDY53619	Canola	cytosol	9.27	12.46
CDY08879	Canola	cytosol	8.61	12.38
CDX86943	Canola	cytosol	13.91	8.85
CDY09784	Canola	cytosol	15.01	8.52
CDX69650	Canola	cytosol	15.01	8.23
CDX78515	Canola	cytosol	15.01	8.18
CDY00242	Canola	cytosol	13.91	8.01
CDY19326	Canola	cytosol	13.02	7.67
CDX97917	Canola	cytosol	13.02	7.67
CDY30689	Canola	cytosol	13.91	7.31
CDY54764	Canola	cytosol	11.92	7.09
CDY40502	Canola	cytosol	11.04	6.55
CDX70496	Canola	cytosol	5.74	4.7
CDX86944	Canola	cytosol	0.44	1.53

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078CUP0	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlants:CDX79739	ProteinID:CDX79739	ProteinID:CDX79739.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00132560001	InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0004EE5B64
SEG:seg	:	:	:	:	:

Description

BnaC03g20750D

Coordinates

chrLK031818:-:2038270..2040659

Molecular Weight (calculated)

48729.6 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.855

Length

453 amino acids

Sequence
(BLAST)

001: MAAARRLRTL QSQPENKVCV DCSQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMESGGNERL NKFLALYGVS KETDIVSKYN
101: SNAASVYRDR IQALAEGRQW RDPPVVKESV SVSKKKPPLG NGNNNGGWDD WEADDSFRSS SDMRRNQSAS DFRSSGGRGA PAKSKSSEDI YSRSQLEASA
201: ANKESFFAKR MAENESKPEG LPPSQGGKYV GFGSSPGPAP RGNQHGGGGG GGGDVFSVMS EGFGRLSLVA ASAANVVQTG TMEFTSKVKE GGLDHTVSET
301: VNVVASKTTE IGQRTWGIMK GVMAIASQKV EEFTKEEAST WNQQNTNEGN GYYQNKAVTN SSLGGSQSSS SYQNNSRNSS SWDDWGEENN TKKEAAPQTK
401: VSTSDDDGWA GWGDNDGKDD DDDDGYYQTA AGDKKSVGHN GKSDTAWTGG GFL

Best Arabidopsis Sequence Match ( AT2G37550.1 )
(BLAST)

001: MAAARRLRTL QSQPENKVCV DCSQKNPQWA SISYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMDAGGNERL NNFLAQYGIS KETDIISKYN
101: SNAASVYRDR IQALAEGRQW RDPPIVKESV GGGLMNKKPP LSQGGGRDSG NGGWDNWDND DSFRSTDMRR NQSAGDFRSS GGRGAPAKSK SSEDIYSRSQ
201: LEASAANKES FFAKRMAENE SKPEGLPPSQ GGKYVGFGSS PGPAPRSNQQ SGGGDVFSVM SEGFGRLSLV AASAANVVQT GTMEFTSKVK EGGLDQTVSE
301: TVNVVASKTT EIGQRTWGIM KGVMAIASQK VEEFTKEEAS TWNQQNKTEG NGYYQNSGIG NKTANSSFGG SQSSSSGHNN SYRNSNSWDD WGEENNSKKE
401: AAPKVSTSND DDDGGWAGWD DNDAKDDDFY YQPASDKKSV GHNGKSDTAW TGGGFL

Arabidopsis Description

AGD7ADP-ribosylation factor GTPase-activating protein AGD7 [Source:UniProtKB/Swiss-Prot;Acc:O80925]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.