CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74953	Canola	cytosol	92.69	89.82
CDY07784	Canola	mitochondrion	80.82	81.76
CDX79739	Canola	mitochondrion	80.82	78.15
CDY18435	Canola	cytosol	69.18	71.8
CDY30849	Canola	cytosol	72.37	70.76
CDX73533	Canola	cytosol	71.92	70.63
CDY23645	Canola	cytosol	26.03	70.37
CDY16083	Canola	cytosol	37.9	70.34
CDX78196	Canola	cytosol	71.46	70.34
CDX76193	Canola	cytosol	72.15	70.07
CDY26647	Canola	plastid	27.85	67.4
CDY71222	Canola	cytosol	8.22	37.5
CDX95838	Canola	cytosol	13.24	22.83
CDY44506	Canola	cytosol	20.55	22.73
CDY01499	Canola	cytosol	21.0	22.6
CDX90439	Canola	cytosol	21.0	22.44
CDX92147	Canola	cytosol	12.79	22.05
CDX78809	Canola	cytosol	19.63	21.99
CDX77687	Canola	cytosol	20.09	21.89
CDY58500	Canola	cytosol	19.86	21.7
CDY59045	Canola	cytosol	17.12	19.08
CDY63834	Canola	cytosol	19.18	17.72
CDY43044	Canola	cytosol	19.18	17.57
CDY43831	Canola	cytosol	19.18	17.43
CDY52243	Canola	cytosol	18.04	16.77
CDY64205	Canola	endoplasmic reticulum	18.72	16.63
CDY28774	Canola	endoplasmic reticulum, plasma membrane	17.58	15.62
CDY53619	Canola	cytosol	8.9	11.57
CDY08879	Canola	cytosol	8.22	11.43
CDX86943	Canola	cytosol	13.93	8.57
CDY09784	Canola	cytosol	15.07	8.27
CDX97917	Canola	cytosol	14.38	8.19
CDX69650	Canola	cytosol	15.3	8.11
CDX78515	Canola	cytosol	15.3	8.06
CDY19326	Canola	cytosol	14.16	8.06
CDY00242	Canola	cytosol	13.93	7.75
CDY54764	Canola	cytosol	12.33	7.09
CDY30689	Canola	cytosol	13.93	7.08
CDY40502	Canola	cytosol	12.1	6.95
CDX70496	Canola	cytosol	5.94	4.7
CDX86944	Canola	cytosol	0.46	1.53

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078JV27	UniProt:A0A078JV27	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlants:CDY69342	ProteinID:CDY69342	ProteinID:CDY69342.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00087001001
InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0004EE65ED	SEG:seg	:

Description

BnaCnng63080DBnaCnng63080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JV27]

Coordinates

chrLK039196:+:1122..4082

Molecular Weight (calculated)

47079.7 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.829

Length

438 amino acids

Sequence
(BLAST)

001: MAAARRLRTL QSQPENKVCV DCSQKNPQWA SISYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMESGGNETL NSFLAQYGIA KETEIAAKYN
101: SNAASVYRDR IQALAEGRQW RDPPVVKEVV VNKKPPLQGS NGGWDDWDND DAFRSPRRNQ SASDFRGYGG GGGGGGAPAK SKSSEDIYSR TQLEDKESFF
201: AKRMAENESK PEGLPPSQGG KYVGFGSSPG PAAPRSNQQS GDVFSVVSEG FGRFSLVAAN VVQSGTMEFT SKVKEGGLDN TVSETVNVVA SKTTEIGQRT
301: WGIMKGVMAI ASQKVEEFTK EEASTWNQQN KSEGNGYTNS SLGGSQSSST PKVSQSSSGG HLNGYGNSNS WDDWGEEKST TKKEAKDDGD GDDDGWAGWD
401: DNDAKDDDDG YYQSGAGVKK SVGHNGKPDT AWTGGGFL

Best Arabidopsis Sequence Match ( AT2G37550.1 )
(BLAST)

001: MAAARRLRTL QSQPENKVCV DCSQKNPQWA SISYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMDAGGNERL NNFLAQYGIS KETDIISKYN
101: SNAASVYRDR IQALAEGRQW RDPPIVKESV GGGLMNKKPP LSQGGGRDSG NGGWDNWDND DSFRSTDMRR NQSAGDFRSS GGRGAPAKSK SSEDIYSRSQ
201: LEASAANKES FFAKRMAENE SKPEGLPPSQ GGKYVGFGSS PGPAPRSNQQ SGGGDVFSVM SEGFGRLSLV AASAANVVQT GTMEFTSKVK EGGLDQTVSE
301: TVNVVASKTT EIGQRTWGIM KGVMAIASQK VEEFTKEEAS TWNQQNKTEG NGYYQNSGIG NKTANSSFGG SQSSSSGHNN SYRNSNSWDD WGEENNSKKE
401: AAPKVSTSND DDDGGWAGWD DNDAKDDDFY YQPASDKKSV GHNGKSDTAW TGGGFL

Arabidopsis Description

AGD7ADP-ribosylation factor GTPase-activating protein AGD7 [Source:UniProtKB/Swiss-Prot;Acc:O80925]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.