CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86943	Canola	cytosol	86.02	95.08
Bra010046.1-P	Field mustard	cytosol	87.17	86.73
AT5G61980.1	Thale cress	cytosol	88.69	84.3
CDY30689	Canola	cytosol	88.95	81.21
CDX86944	Canola	cytosol	13.47	80.92
CDX70496	Canola	cytosol	48.03	68.35
Zm00001d049872_P001	Maize	cytosol	43.96	63.02
CDY09784	Canola	cytosol	63.66	62.78
CDX69650	Canola	cytosol	64.17	61.14
CDX78515	Canola	cytosol	64.55	61.13
GSMUA_Achr11P...	Banana	cytosol	62.9	60.66
VIT_17s0000g00310.t01	Wine grape	cytosol	63.15	60.1
GSMUA_Achr4P00060_001	Banana	cytosol	62.01	58.3
TraesCS5A01G293000.1	Wheat	cytosol	61.25	58.0
TraesCS5B01G292200.1	Wheat	cytosol	61.25	57.79
EER99172	Sorghum	cytosol	60.99	57.42
TraesCS5D01G300300.2	Wheat	cytosol	61.25	57.38
Solyc03g118260.1.1	Tomato	cytosol	58.32	57.38
Os09t0510700-01	Rice	cytosol	60.74	57.18
Zm00001d009353_P001	Maize	cytosol	8.77	57.02
Zm00001d021087_P003	Maize	cytosol	60.48	56.87
TraesCS7A01G263800.2	Wheat	cytosol	59.21	56.62
Os08t0537600-01	Rice	plasma membrane	59.59	56.44
HORVU7Hr1G055220.21	Barley	cytosol	59.59	56.44
HORVU5Hr1G077570.15	Barley	cytosol	59.97	56.39
OQU80812	Sorghum	cytosol	58.96	56.31
Zm00001d031667_P006	Maize	cytosol	58.7	56.14
PGSC0003DMT400036762	Potato	cytosol	41.3	55.65
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	58.45	54.31
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	58.45	54.31
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	49.43	52.57
Zm00001d015981_P001	Maize	peroxisome	10.17	52.29
CDY71222	Canola	cytosol	5.72	46.88
Zm00001d004245_P003	Maize	cytosol	11.44	46.88
Zm00001d015278_P001	Maize	mitochondrion	18.55	43.45
CDY53619	Canola	cytosol	18.17	42.43
CDX97917	Canola	cytosol	40.66	41.61
CDY19326	Canola	cytosol	40.53	41.48
CDY40502	Canola	cytosol	39.77	41.02
CDY54764	Canola	cytosol	38.75	40.03
Zm00001d049871_P001	Maize	cytosol	9.15	37.7
Zm00001d023982_P001	Maize	cytosol	15.37	31.11
CDX95838	Canola	cytosol	8.13	25.2
CDX92147	Canola	cytosol	7.75	24.02
CDY63834	Canola	cytosol	10.55	17.51
CDY52243	Canola	cytosol	10.29	17.2
CDY43044	Canola	cytosol	10.42	17.15
CDY43831	Canola	cytosol	10.29	16.8
CDY58500	Canola	cytosol	8.13	15.96
CDX77687	Canola	cytosol	8.13	15.92
CDX78809	Canola	cytosol	7.75	15.6
CDY28774	Canola	endoplasmic reticulum, plasma membrane	9.66	15.42
CDY64205	Canola	endoplasmic reticulum	9.66	15.42
CDY44506	Canola	cytosol	7.75	15.4
CDY18435	Canola	cytosol	8.01	14.93
CDX90439	Canola	cytosol	7.62	14.63
CDY07784	Canola	mitochondrion	8.01	14.55
CDY01499	Canola	cytosol	7.5	14.5
CDY59045	Canola	cytosol	6.99	13.99
CDY69342	Canola	mitochondrion	7.75	13.93
CDX79739	Canola	mitochondrion	8.01	13.91
CDX76193	Canola	cytosol	7.88	13.75
CDX74953	Canola	cytosol	7.88	13.72
CDY30849	Canola	cytosol	7.75	13.62
CDX78196	Canola	cytosol	7.62	13.48
CDX73533	Canola	cytosol	7.62	13.45
CDY16083	Canola	cytosol	2.29	7.63
CDY23645	Canola	cytosol	1.52	7.41
CDY26647	Canola	plastid	1.65	7.18
CDY08879	Canola	cytosol	2.54	6.35

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078EGM8	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlants:CDY00242	ProteinID:CDY00242	ProteinID:CDY00242.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00109792001	InterPro:IPR001164
InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770
InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain
PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180
PANTHER:PTHR23180:SF373	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657
SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0004EE36B9	SEG:seg	:

Description

BnaA06g21430D

Coordinates

chrLK031917:+:363028..367399

Molecular Weight (calculated)

89330.2 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.470

Length

787 amino acids

Sequence
(BLAST)

001: MHFAKLDDSP MFRQQMQCME ESADLLGMRC LRFYKDCTKY TEGLGEGYDG DIDFVNALES FGGGHNDPIG VAFGGPVMTK FTVALREIGT YKEVLRSEVE
101: HILNDRLVQF VNVDVQEIKE ARKRFDKASI TYDQAREKFL SLRKSTRLDV AATIEEDLHS ARAAFEQARF HLVSALSNAE AKKRFEFLEA GYELLQQMEP
201: FINQVLSYAH QSREFTDYEM ASLNERMQEY KRQVDRETRN LNGSPTGDGM RHNSRSSQKV IEAVMQSAAK GKVQTIRQGY LSKRSSNLRG DWKRRFFVLD
301: SRGMLYYYRK PWNWSSGNGN RSSVHKNMTS ENSPGLLSRW LSSHYHDEKP VARLTVNLLT STIKVDADQT DLRFCFRIIS PTKVYTLQAE NAQDQMDWIE
401: KITGVTTSLL SFQTPERTIM RLSTMDGDTF SASESGSVAD LYDIEHAEIG ESTVEHNHHI TGGNRTRFSG CLQQHDMVAK PIDVLTKVLG NEKCADCGAP
501: EPDWASLNLG VLICIECSGI HRNLGVHISK VRSLTLDVKV WEPSVLTLFQ SLGNVYVNSV WEELLNSESR SSGTPMSDRP TRKFLARKPG LSDPISVKEL
601: FIHAKYSERI FVRKETDSLH SPAVFQEIWE NVRANDKKSV YKHIVCSQTD VNALRGQATY TVSLSLWKMM QLEAKEETLK AKIKRIEEEE ETSKDCSLLH
701: LACLYADIGM VELLLQYGAK INATDSKGRT PLHHCIISRR YAIARLLLMR GGDPNAVDKE SNTPVKYALE TEVNDSELIA LLTDSKR

Best Arabidopsis Sequence Match ( AT5G61980.1 )
(BLAST)

001: MHFAKLDDSP MFRQQMQSME ESAELLRLRC LRFYKGCRKY TEGLGEGYDA DIGFVNALES FGGGHNDPVC VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLSDRLLQF VNGDVHEVKE ARKRFDKATI TYDQAREKYL SLRKSTRLDV AATIEEDLHS ARTTFEQARF HLVSALSNAE SKKRFEFLEA VSGTMDAHLR
201: FFKQGYELLH QMEPFINQVL AYAHQSRECA NYEMASLNER MQEYQRQVDR ETRNSCVSPT GDGMRHNSRN SQKVIEAVMQ SAAKGKVQTI RQGYLSKRSS
301: NLRGDWKRRF FILDSRGMLY YYRKPWNWSS GNGSRSVVHR NMASENSPGL LSRWLSSHYH GGVHDEKPVA RHTVNLLTST IKVDADQTDL RFCFRIISPT
401: KVYTLQAENA QDQMDWIEKI TGVIASLLSF QTPERAIMRL STVDGGDTFS ASDSGSLADP YDIEQAESGE STVEHPMTGG NRSRFSGCLQ QHDMVKTEKP
501: IDVLTRVLGN ERCADCGAPE PDWASLNLGV LICIECSGIH RNLGVHISKV RSLTLDVKVW EPSVLTLFQS LGNVYVNSVW EELLNSESRT SSASRSSGTP
601: KSDRPRKLLV RKPGFNDPIS VKELFIHAKY SERIFVRKAI DSQHFQAVFQ EIWENVRAND KKSVYRHIVC SEADVNALRG QASYTVSLPL SKMMQMEETL
701: EAKFKSIEEE FQENPAGYSN SRGDGESMVR EETSNDCSLL HLACLSADIG MVELLLQYGA KINATDSKGR TPLHHCIISR RYAIARLLLM RGGDPNAVDK
801: DSNIPVKYAS QTDLNDSELI ALLTDSKR

Arabidopsis Description

AGD1ADP-ribosylation factor GTPase-activating protein AGD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.