CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78515	Canola	cytosol	99.1	65.94
Zm00001d049872_P001	Maize	cytosol	65.28	65.76
CDX69650	Canola	cytosol	95.66	64.04
CDY09784	Canola	cytosol	90.96	63.03
CDX86944	Canola	cytosol	14.29	60.31
GSMUA_Achr11P...	Banana	cytosol	79.57	53.92
TraesCS5A01G293000.1	Wheat	cytosol	80.11	53.31
TraesCS5B01G292200.1	Wheat	cytosol	80.11	53.12
Os09t0510700-01	Rice	cytosol	79.57	52.63
TraesCS5D01G300300.2	Wheat	cytosol	79.93	52.62
GSMUA_Achr4P00060_001	Banana	cytosol	79.2	52.33
EER99172	Sorghum	cytosol	79.02	52.27
Zm00001d021087_P003	Maize	cytosol	79.02	52.21
HORVU5Hr1G077570.15	Barley	cytosol	78.48	51.85
OQU80812	Sorghum	cytosol	75.23	50.49
TraesCS7A01G263800.2	Wheat	cytosol	74.68	50.18
Zm00001d031667_P006	Maize	cytosol	74.14	49.82
HORVU7Hr1G055220.21	Barley	cytosol	74.5	49.58
Os08t0537600-01	Rice	plasma membrane	73.24	48.74
CDY00242	Canola	cytosol	68.35	48.03
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	73.42	47.93
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	73.42	47.93
CDY30689	Canola	cytosol	72.15	46.29
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	58.95	44.05
CDX86943	Canola	cytosol	55.88	43.4
Zm00001d009353_P001	Maize	cytosol	9.22	42.15
Zm00001d015278_P001	Maize	mitochondrion	23.87	39.29
CDY71222	Canola	cytosol	6.33	36.46
CDY40502	Canola	cytosol	46.11	33.42
CDX97917	Canola	cytosol	46.11	33.16
CDY54764	Canola	cytosol	45.57	33.07
CDY19326	Canola	cytosol	45.93	33.03
Zm00001d015981_P001	Maize	peroxisome	8.32	30.07
Zm00001d004245_P003	Maize	cytosol	9.4	27.08
Zm00001d023982_P001	Maize	cytosol	18.26	25.96
CDX95838	Canola	cytosol	6.51	14.17
CDX92147	Canola	cytosol	6.33	13.78
CDY58500	Canola	cytosol	5.79	7.98
CDX77687	Canola	cytosol	5.79	7.96
CDX78809	Canola	cytosol	5.42	7.67
CDY59045	Canola	cytosol	5.42	7.63
CDY44506	Canola	cytosol	5.42	7.58
CDY52243	Canola	cytosol	6.33	7.43
CDY63834	Canola	cytosol	6.33	7.38
CDY43044	Canola	cytosol	6.33	7.32
CDY43831	Canola	cytosol	6.33	7.26
CDX90439	Canola	cytosol	5.06	6.83
CDY01499	Canola	cytosol	4.88	6.63
CDY53619	Canola	cytosol	3.8	6.23
CDY18435	Canola	cytosol	4.7	6.16
CDY28774	Canola	endoplasmic reticulum, plasma membrane	5.42	6.09
CDX78196	Canola	cytosol	4.88	6.07
CDX73533	Canola	cytosol	4.88	6.05
CDY07784	Canola	mitochondrion	4.7	6.0
CDY69342	Canola	mitochondrion	4.7	5.94
CDY30849	Canola	cytosol	4.7	5.8
CDX76193	Canola	cytosol	4.7	5.76
CDX74953	Canola	cytosol	4.7	5.75
CDX79739	Canola	mitochondrion	4.7	5.74
CDY64205	Canola	endoplasmic reticulum	5.06	5.68
Zm00001d049871_P001	Maize	cytosol	0.36	1.05
CDY23645	Canola	cytosol	0.18	0.62
CDY08879	Canola	cytosol	0.0	0.0
CDY16083	Canola	cytosol	0.0	0.0
CDY26647	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078C0R1	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlants:CDX70496	ProteinID:CDX70496
ProteinID:CDX70496.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
EnsemblPlantsGene:GSBRNA2T00140325001	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR004148	InterPro:IPR027267	InterPro:IPR038508
PFAM:PF00169	PFAM:PF01412	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00721
SUPFAM:SSF103657	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0004EED77F	SEG:seg	:

Description

BnaC03g05800D

Coordinates

chrLK031791:-:738308..742443

Molecular Weight (calculated)

62463.8 Da

IEP (calculated)

8.753

GRAVY (calculated)

-0.616

Length

553 amino acids

Sequence
(BLAST)

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.