CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70496	Canola	cytosol	65.94	99.1
Bra006193.1-P	Field mustard	cytosol	96.15	98.28
CDY09784	Canola	cytosol	91.22	94.99
CDX69650	Canola	cytosol	94.34	94.92
CDY53619	Canola	cytosol	34.06	83.98
VIT_01s0150g00030.t01	Wine grape	cytosol	79.06	78.97
KRH45201	Soybean	cytosol	77.98	78.74
PGSC0003DMT400005756	Potato	cytosol	76.78	78.09
KRH01512	Soybean	cytosol	76.53	75.8
Zm00001d049872_P001	Maize	cytosol	48.01	72.68
GSMUA_Achr11P...	Banana	cytosol	69.43	70.71
TraesCS5A01G293000.1	Wheat	cytosol	69.55	69.55
TraesCS5B01G292200.1	Wheat	cytosol	69.43	69.18
Os09t0510700-01	Rice	cytosol	69.19	68.78
TraesCS5D01G300300.2	Wheat	cytosol	69.43	68.69
GSMUA_Achr4P00060_001	Banana	cytosol	68.95	68.46
EER99172	Sorghum	cytosol	68.59	68.18
Zm00001d021087_P003	Maize	cytosol	68.35	67.86
HORVU5Hr1G077570.15	Barley	cytosol	68.11	67.62
OQU80812	Sorghum	cytosol	65.22	65.78
TraesCS7A01G263800.2	Wheat	cytosol	65.1	65.74
HORVU7Hr1G055220.21	Barley	cytosol	64.98	64.98
Zm00001d031667_P006	Maize	cytosol	64.14	64.76
CDY00242	Canola	cytosol	61.13	64.55
Os08t0537600-01	Rice	plasma membrane	64.38	64.38
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	64.5	63.28
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	64.5	63.28
CDX86944	Canola	cytosol	9.87	62.6
CDY30689	Canola	cytosol	64.26	61.95
CDX86943	Canola	cytosol	52.95	61.8
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	54.87	61.62
Zm00001d009353_P001	Maize	cytosol	8.78	60.33
Zm00001d015981_P001	Maize	peroxisome	9.87	53.59
Zm00001d015278_P001	Maize	mitochondrion	20.22	50.0
CDY71222	Canola	cytosol	5.66	48.96
Zm00001d004245_P003	Maize	cytosol	10.83	46.88
CDX97917	Canola	cytosol	42.84	46.29
CDY19326	Canola	cytosol	42.6	46.03
CDY40502	Canola	cytosol	41.52	45.22
Zm00001d049871_P001	Maize	cytosol	10.23	44.5
CDY54764	Canola	cytosol	40.31	43.96
Zm00001d023982_P001	Maize	cytosol	15.28	32.65
CDX95838	Canola	cytosol	8.06	26.38
CDX92147	Canola	cytosol	7.46	24.41
CDY63834	Canola	cytosol	10.47	18.35
CDY43044	Canola	cytosol	10.23	17.78
CDY43831	Canola	cytosol	10.11	17.43
CDY52243	Canola	cytosol	9.87	17.41
CDX78809	Canola	cytosol	7.58	16.11
CDY64205	Canola	endoplasmic reticulum	9.51	16.02
CDY58500	Canola	cytosol	7.7	15.96
CDX77687	Canola	cytosol	7.7	15.92
CDY44506	Canola	cytosol	7.58	15.91
CDX76193	Canola	cytosol	8.54	15.74
CDX78196	Canola	cytosol	8.42	15.73
CDX73533	Canola	cytosol	8.3	15.47
CDY28774	Canola	endoplasmic reticulum, plasma membrane	9.15	15.42
CDY69342	Canola	mitochondrion	8.06	15.3
CDX74953	Canola	cytosol	8.3	15.27
CDY07784	Canola	mitochondrion	7.94	15.24
CDY30849	Canola	cytosol	8.18	15.18
CDX79739	Canola	mitochondrion	8.18	15.01
CDY18435	Canola	cytosol	7.58	14.93
CDX90439	Canola	cytosol	7.22	14.63
CDY59045	Canola	cytosol	6.86	14.5
CDY01499	Canola	cytosol	6.98	14.25
CDY16083	Canola	cytosol	2.41	8.47
CDY23645	Canola	cytosol	1.56	8.02
CDY26647	Canola	plastid	1.68	7.73
CDY08879	Canola	cytosol	2.05	5.4

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078CNV9	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlants:CDX78515	ProteinID:CDX78515	ProteinID:CDX78515.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00129917001	InterPro:IPR001164
InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770
InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain
PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180
PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657
SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0004EF4D16	SEG:seg	:

Description

BnaA03g04270D

Coordinates

chrLK031815:-:1099879..1105259

Molecular Weight (calculated)

92828.8 Da

IEP (calculated)

8.107

GRAVY (calculated)

-0.504

Length

831 amino acids

Sequence
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTRSDV AAALEQELHT SRSMFEQARF NLVTTLSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAKQSRERS NYEQAALNEK MQEYKRQVDR ESRFGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGASSQL SGQRNSSELG SGLLSRWLSS NNHGGVHDEK SVARHTVNLL TSTIKVDADQ SDLRFCFRII
401: SPSKNYTLQA ESALDQMDWI EKITGVIASL LSSQVPERCL PGSPMGSGHH RSASESSSYE SSEYDIPNTE EFVCERSFLG YSERPSRNFQ PQRSIRKGEK
501: PIDVLKKVSG NDKCADCGAP EPDWASLNLG VLVCIECSGV HRNLGVHISK VRSLTLDVKV WEPSVITLFQ ALGNTFANTV WEELLHSRSA FHVEPGLTGS
601: DKSRVMVTGK PSYADMISIK EKYIQAKYAE KLFVRRSRDC DFPQSVAQQM WEAVSGNDKK AVYRLIVNGE ADVNCVYDHQ SSSTSSLTLS RVMLIPEKPP
701: TREDVLLRLR NELLDRNSSG CCSSNVPPEE TGGCSLLHCA CEKADIGMVE LLLQYGANVN AKDSSGQTPL HYCIRSGKAV VARLLLTRGA DPEAVNGEGK
801: TALDIAAESK FTDAEVLALL SEAANGYNHR Q

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.