CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029030.1-P	Field mustard	cytosol	98.95	98.95
CDY43831	Canola	cytosol	94.56	93.78
CDY71222	Canola	cytosol	18.2	90.62
CDY52243	Canola	cytosol	87.45	88.75
CDY63834	Canola	cytosol	87.66	88.4
AT5G54310.1	Thale cress	cytosol	87.24	86.34
CDY64205	Canola	endoplasmic reticulum	85.36	82.76
CDY28774	Canola	endoplasmic reticulum, plasma membrane	83.26	80.73
VIT_19s0014g03510.t01	Wine grape	cytosol	62.34	62.34
Solyc07g063550.2.1	Tomato	cytosol	59.41	59.79
PGSC0003DMT400049649	Potato	cytosol	59.41	59.79
KRH22157	Soybean	cytosol	57.74	57.38
KRH27179	Soybean	cytosol	56.9	56.2
KRH26038	Soybean	cytosol	58.37	55.8
PGSC0003DMT400064425	Potato	cytosol	51.88	52.65
Solyc10g006850.2.1	Tomato	cytosol	51.88	49.6
KRH55419	Soybean	cytosol	52.93	49.03
KRH30767	Soybean	nucleus	24.48	48.15
CDX92147	Canola	cytosol	23.43	44.09
CDX95838	Canola	cytosol	23.22	43.7
Zm00001d051030_P001	Maize	cytosol, plastid	29.92	26.88
Zm00001d046873_P001	Maize	cytosol, plastid	29.92	26.88
Zm00001d016547_P001	Maize	cytosol, plastid	29.92	26.88
CDY07784	Canola	mitochondrion	18.41	20.32
CDX79739	Canola	mitochondrion	18.83	19.87
CDY44506	Canola	cytosol	16.32	19.7
CDX78809	Canola	cytosol	15.9	19.44
CDX77687	Canola	cytosol	16.32	19.4
CDY58500	Canola	cytosol	16.11	19.2
CDY69342	Canola	mitochondrion	17.57	19.18
CDY18435	Canola	cytosol	16.74	18.96
CDX78196	Canola	cytosol	17.36	18.65
CDX76193	Canola	cytosol	17.57	18.63
CDX74953	Canola	cytosol	17.57	18.58
CDY30849	Canola	cytosol	17.15	18.3
CDY01499	Canola	cytosol	15.48	18.18
CDX90439	Canola	cytosol	15.48	18.05
CDX73533	Canola	cytosol	16.74	17.94
CDY59045	Canola	cytosol	14.44	17.56
CDY53619	Canola	cytosol	10.88	15.43
CDY23645	Canola	cytosol	4.81	14.2
CDY16083	Canola	cytosol	6.28	12.71
CDY26647	Canola	plastid	4.39	11.6
CDX86943	Canola	cytosol	17.15	11.52
CDY09784	Canola	cytosol	17.57	10.53
CDY08879	Canola	cytosol	6.9	10.48
CDY00242	Canola	cytosol	17.15	10.42
CDY19326	Canola	cytosol	16.53	10.27
CDX78515	Canola	cytosol	17.78	10.23
CDX69650	Canola	cytosol	17.57	10.17
CDX97917	Canola	cytosol	16.32	10.14
CDY30689	Canola	cytosol	17.57	9.74
CDY40502	Canola	cytosol	14.02	8.78
CDY54764	Canola	cytosol	13.81	8.66
CDX70496	Canola	cytosol	7.32	6.33
CDX86944	Canola	cytosol	0.63	2.29

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078I0H3	UniProt:A0A078I0H3	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlants:CDY43044	ProteinID:CDY43044	ProteinID:CDY43044.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00075874001
InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0004EF0A34	SEG:seg	:

Description

BnaA03g11910DBnaA03g11910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0H3]

Coordinates

chrLK032543:+:170479..173963

Molecular Weight (calculated)

52222.4 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.670

Length

478 amino acids

Sequence
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIHSMGNE RANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSKGEKAR SPPRVEQERR RSVERTVPGY EHGHSSSPVN LFEEKKTVQA PRTRNSVAAT RISLPVPPQG PNQVIKPQQK
201: IETVAAPVET KKPTVNVAPA SDPPKVDFAT DLFNMLSVDE PAANTSETAA PADDNLWAGF QSAGSGQTAE KIVTAKPDES SSPPATGIED LFKDTPNFTV
301: QQAPQKDVKG DIMSLFEKSN MVSPFAMQQQ QFAMLAQQQA LYMAAAKAAG GTPNGVNQQA VANALNLASA NWSNNGYQIP GMTNPGGGQP DLQKLMQNMN
401: ANMNMRPVQP QENTPQYPIS SFYTTSQVNH VGNGMTPNST GKPQSSTAAQ QPTGTTPSSQ SGKEFDFSSL MDGMFTKH

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.