Factsheet for Solyc10g006850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064425	Potato	cytosol	90.6	96.18
Solyc07g063550.2.1	Tomato	cytosol	64.2	67.58
VIT_19s0014g03510.t01	Wine grape	cytosol	56.8	59.41
KRH22157	Soybean	cytosol	53.6	55.72
KRH26038	Soybean	cytosol	54.2	54.2
KRH27179	Soybean	cytosol	52.4	54.13
CDY52243	Canola	cytosol	49.2	52.23
CDY63834	Canola	cytosol	49.4	52.11
CDY43831	Canola	cytosol	50.2	52.07
Bra002995.1-P	Field mustard	cytosol	49.2	51.9
CDY43044	Canola	cytosol	49.6	51.88
Bra022711.1-P	Field mustard	cytosol	48.8	51.69
Bra029030.1-P	Field mustard	cytosol	49.2	51.46
AT5G54310.1	Thale cress	cytosol	49.2	50.93
KRH55419	Soybean	cytosol	49.8	48.26
CDY28774	Canola	endoplasmic reticulum, plasma membrane	46.4	47.06
CDY64205	Canola	endoplasmic reticulum	45.8	46.45
Solyc03g098500.2.1	Tomato	nucleus	22.4	45.16
KRH30767	Soybean	nucleus	20.8	42.8
Solyc03g006610.2.1	Tomato	cytosol	35.0	37.55
Zm00001d016547_P001	Maize	cytosol, plastid	26.8	25.19
Zm00001d046873_P001	Maize	cytosol, plastid	26.8	25.19
Zm00001d051030_P001	Maize	cytosol, plastid	26.8	25.19
Solyc08g005070.2.1	Tomato	cytosol	15.6	19.4
Solyc08g076920.2.1	Tomato	nucleus	15.4	18.69
Solyc10g084690.1.1	Tomato	mitochondrion	16.4	17.86
Solyc09g010520.2.1	Tomato	nucleus	15.6	16.7
Solyc12g042170.1.1	Tomato	cytosol	15.6	14.39
Solyc05g023750.2.1	Tomato	cytosol	17.8	10.89
Solyc03g118260.1.1	Tomato	cytosol	16.8	10.5
Solyc04g008660.2.1	Tomato	cytosol	15.4	9.86
Solyc12g042180.1.1	Tomato	cytosol	1.0	2.23

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4CXL6	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc10g006850.2	EnsemblPlants:Solyc10g006850.2.1
UniParc:UPI000276AFB3	SEG:seg	:	:	:	:

Description

Probable ADP-ribosylation factor GTPase-activating protein AGD5 [Source:Projected from Arabidopsis thaliana (AT5G54310) UniProtKB/Swiss-Prot;Acc:Q9FL69]

Coordinates

chr10:-:1283178..1290235

Molecular Weight (calculated)

54678.9 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.592

Length

500 amino acids

Sequence
(BLAST)

001: MNEKANVSKE LNAKHRKILE GLLKLPENKE CADCKAKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE KANSYWEAQV
101: PTNYDRVAIE NFIRAKYEDK RWIPKETEKS TSRIQERRAT EKQQKHSDRS GFEHASNSGG SSVERVSLQR PSTKQDLPAA RFSIPLPPRG PEQVRQTYIH
201: QADSFRSVQN FESYCSTHET VSLGVLPHQT SQTTEPIAVT ESAKQVTAIA DPPKVETATD LFDMLSMDSP SDNCASAAPV EDNTWTAFQC IPSQEEVEAK
301: SGVAKSDHRK CQSASAIDDL FKDSSTLSSS VSTSSLSEKL PKDVKNDIMN LFDKSNMVSP FAMHQQQLAQ LAQQQSLLMA AAAASGNLKI PGDVQQSPNG
401: SNIVNQSWPH AGYQFPGMMM PASGKTELEK YFQAGAAHSA GNFVPVSTSS VYQMGQNYSG NGTVPSMPSG DAATTLSSSS TQSTKEDDFS SLTQGMFSKR

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.