CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22157	Soybean	cytosol	91.74	92.31
KRH30767	Soybean	nucleus	46.07	91.77
KRH26038	Soybean	cytosol	75.41	73.0
VIT_19s0014g03510.t01	Wine grape	cytosol	64.88	65.69
KRH55419	Soybean	cytosol	67.56	63.37
Solyc07g063550.2.1	Tomato	cytosol	61.57	62.74
PGSC0003DMT400049649	Potato	cytosol	60.33	61.47
Bra002995.1-P	Field mustard	cytosol	58.06	59.28
CDY63834	Canola	cytosol	57.85	59.07
AT5G54310.1	Thale cress	cytosol	58.47	58.59
CDY52243	Canola	cytosol	56.41	57.96
Bra022711.1-P	Field mustard	cytosol	55.99	57.42
CDY43044	Canola	cytosol	56.2	56.9
Bra029030.1-P	Field mustard	cytosol	55.58	56.28
CDY43831	Canola	cytosol	55.79	56.02
PGSC0003DMT400064425	Potato	cytosol	53.72	55.2
KRH15700	Soybean	cytosol	21.69	54.12
CDY64205	Canola	endoplasmic reticulum	54.96	53.96
CDY28774	Canola	endoplasmic reticulum, plasma membrane	53.93	52.94
Solyc10g006850.2.1	Tomato	cytosol	54.13	52.4
KRH38902	Soybean	cytosol	23.76	47.33
KRH09434	Soybean	cytosol	23.35	46.31
KRH41906	Soybean	cytosol	25.41	41.14
Zm00001d016547_P001	Maize	cytosol, plastid	29.13	26.5
Zm00001d046873_P001	Maize	cytosol, plastid	29.13	26.5
Zm00001d051030_P001	Maize	cytosol, plastid	29.13	26.5
KRH75607	Soybean	cytosol	17.56	21.09
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	17.36	20.84
KRH67539	Soybean	mitochondrion	17.15	17.08
KRG95812	Soybean	endoplasmic reticulum	17.15	16.97
KRH19707	Soybean	cytosol	16.12	16.22
KRH32302	Soybean	mitochondrion	15.91	16.08
KRH63858	Soybean	cytosol	17.77	10.96
KRH45201	Soybean	cytosol	18.18	10.69
KRH01512	Soybean	cytosol	18.39	10.61
KRH59741	Soybean	cytosol	17.36	10.5
KRH29237	Soybean	cytosol	16.12	10.05
KRH24228	Soybean	cytosol	15.91	9.92
KRH54108	Soybean	cytosol	14.88	9.76

Protein Annotations

EntrezGene:100780452	MapMan:22.3.4.2	Gene3D:3.30.40.160	EMBL:ACUP02007781	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:GLYMA_12G219800	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	UniProt:I1LUW6	InterPro:IPR001164	InterPro:IPR038508
EnsemblPlants:KRH27179	ProteinID:KRH27179	ProteinID:KRH27179.1	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000233C8C1	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:37935597..37940844

Molecular Weight (calculated)

52512.1 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.618

Length

484 amino acids

Sequence
(BLAST)

001: MNCKANVSKE LNAKHKKILE GLLKLPENRG CADCKAKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPDQ VAFIQSMGNE KANSFWEAEL
101: PPNYDRVGIE NFIRAKYDEK RWIPRDGNSK TPSGLREEKS PSHWQRPVER SGYAAVSENK FEERKKIQPS NAISTTRINV PAPPTASEQV TPITKPQHVE
201: KVEPVAPQPP ASQPQAETSK QATDTVQNIP PKVDYATDLF NMLSMDGPNE NGSEAAGTTT DDNHWAGFQS AAEVSTAEKT SPPKAADSTP VSASGIEDLF
301: KDLSPVTPSL TPEKPQKDVK NDIMRLFEKG NIVSPFSMHQ QQLGMLAHQQ SLLMAAAAKS TGGDPRYPAS IQQPRPPNVP IQSWPATGYS IPGVMPMGGQ
401: GDLQKLMQGQ PRSMTPAHFA GSSVQYPPSS FYGMGQVAPP VNGMMTTMGV NKPQSGAPAV SSSPTQSAKD YDFSSLTQGM FTKQ

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.