CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71222	Canola	cytosol	18.68	91.67
CDY28774	Canola	endoplasmic reticulum, plasma membrane	94.06	89.86
CDY63834	Canola	cytosol	89.17	88.61
CDY43044	Canola	cytosol	88.75	87.45
CDY43831	Canola	cytosol	87.9	85.89
AT5G54310.1	Thale cress	cytosol	86.2	84.06
CDY64205	Canola	endoplasmic reticulum	87.05	83.16
VIT_19s0014g03510.t01	Wine grape	cytosol	63.06	62.13
Solyc07g063550.2.1	Tomato	cytosol	59.24	58.74
PGSC0003DMT400049649	Potato	cytosol	58.6	58.11
KRH22157	Soybean	cytosol	58.6	57.38
KRH27179	Soybean	cytosol	57.96	56.41
KRH26038	Soybean	cytosol	59.45	56.0
PGSC0003DMT400064425	Potato	cytosol	52.02	52.02
Solyc10g006850.2.1	Tomato	cytosol	52.23	49.2
KRH55419	Soybean	cytosol	52.87	48.26
KRH30767	Soybean	nucleus	23.99	46.5
CDX92147	Canola	cytosol	23.99	44.49
CDX95838	Canola	cytosol	23.78	44.09
Zm00001d016547_P001	Maize	cytosol, plastid	29.09	25.75
Zm00001d046873_P001	Maize	cytosol, plastid	29.09	25.75
Zm00001d051030_P001	Maize	cytosol, plastid	29.09	25.75
CDY07784	Canola	mitochondrion	17.62	19.17
CDX77687	Canola	cytosol	16.35	19.15
CDY58500	Canola	cytosol	16.14	18.95
CDY44506	Canola	cytosol	15.71	18.69
CDX78809	Canola	cytosol	15.29	18.41
CDY69342	Canola	mitochondrion	16.77	18.04
CDX78196	Canola	cytosol	16.99	17.98
CDX76193	Canola	cytosol	17.2	17.96
CDY01499	Canola	cytosol	15.5	17.94
CDX79739	Canola	mitochondrion	17.2	17.88
CDX90439	Canola	cytosol	15.5	17.8
CDY18435	Canola	cytosol	15.92	17.77
CDX74953	Canola	cytosol	16.99	17.7
CDY30849	Canola	cytosol	16.77	17.63
CDY59045	Canola	cytosol	14.44	17.3
CDX73533	Canola	cytosol	16.35	17.26
CDY53619	Canola	cytosol	10.4	14.54
CDY23645	Canola	cytosol	4.25	12.35
CDX86943	Canola	cytosol	17.2	11.38
CDY16083	Canola	cytosol	5.52	11.02
CDY26647	Canola	plastid	4.03	10.5
CDY00242	Canola	cytosol	17.2	10.29
CDY19326	Canola	cytosol	16.77	10.27
CDY09784	Canola	cytosol	17.2	10.15
CDX97917	Canola	cytosol	16.35	10.01
CDX78515	Canola	cytosol	17.41	9.87
CDY08879	Canola	cytosol	6.58	9.84
CDX69650	Canola	cytosol	17.2	9.81
CDY30689	Canola	cytosol	17.62	9.63
CDY40502	Canola	cytosol	14.23	8.78
CDY54764	Canola	cytosol	14.01	8.66
CDX70496	Canola	cytosol	7.43	6.33
CDX86944	Canola	cytosol	0.42	1.53

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078IT66	UniProt:A0A078IT66	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlants:CDY52243	ProteinID:CDY52243	ProteinID:CDY52243.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00005217001
InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0004EE525E	SEG:seg	:

Description

BnaC02g44640DBnaC02g44640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT66]

Coordinates

chrLK033070:-:65057..68823

Molecular Weight (calculated)

51094.1 Da

IEP (calculated)

8.004

GRAVY (calculated)

-0.601

Length

471 amino acids

Sequence
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE RANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSKGEKAR SPPRVEQARR SVERTVPGYE HGHTSSPPVN LFEEKKAVQA PRTRYSVSAT RISLPVPPQG PAQVIKPQQK
201: VESVETTKAA VNVAPASEPP KVDFATDLFD MLSMDEPTAN PSEAAPADDN WAGFQSAGNG QTVEKSVTAK PDEISSPPAT GIEDLFNDTP TLVAQQAPQK
301: DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGA NQQAVANALN LASANWSNTG HQIPGMTNPG GGQADLQKLM QNMNMNANMN
401: MRPAQPQAST PQYPVSSFYT TGQVNPAANG MTPNSTVKPQ SSSSATSTTP SSQTGKDFDF SSLMDGMFTK H

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.