CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00242	Canola	cytosol	95.08	86.02
Bra010046.1-P	Field mustard	cytosol	87.36	78.63
AT5G61980.1	Thale cress	cytosol	87.64	75.36
CDY30689	Canola	cytosol	88.2	72.85
CDX70496	Canola	cytosol	43.4	55.88
Zm00001d009353_P001	Maize	cytosol	9.41	55.37
PGSC0003DMT400036762	Potato	cytosol	45.22	55.14
CDY09784	Canola	cytosol	60.96	54.39
VIT_17s0000g00310.t01	Wine grape	cytosol	61.66	53.08
CDX78515	Canola	cytosol	61.8	52.95
CDX69650	Canola	cytosol	61.38	52.91
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	54.92	52.84
GSMUA_Achr11P...	Banana	cytosol	60.39	52.7
Zm00001d015981_P001	Maize	peroxisome	11.1	51.63
Zm00001d049872_P001	Maize	cytosol	38.76	50.27
TraesCS5A01G293000.1	Wheat	cytosol	58.57	50.18
TraesCS5B01G292200.1	Wheat	cytosol	58.57	50.0
GSMUA_Achr4P00060_001	Banana	cytosol	58.71	49.94
HORVU5Hr1G077570.15	Barley	cytosol	58.57	49.82
TraesCS5D01G300300.2	Wheat	cytosol	58.57	49.64
Os09t0510700-01	Rice	cytosol	58.29	49.64
Solyc03g118260.1.1	Tomato	cytosol	55.62	49.5
EER99172	Sorghum	cytosol	57.87	49.28
Zm00001d021087_P003	Maize	cytosol	57.58	48.98
Os08t0537600-01	Rice	plasma membrane	56.18	48.13
TraesCS7A01G263800.2	Wheat	cytosol	55.62	48.12
HORVU7Hr1G055220.21	Barley	cytosol	56.04	48.01
OQU80812	Sorghum	cytosol	55.34	47.82
Zm00001d031667_P006	Maize	cytosol	55.06	47.63
CDY71222	Canola	cytosol	6.32	46.88
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	55.76	46.87
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	55.76	46.87
Zm00001d004245_P003	Maize	cytosol	12.36	45.83
CDY53619	Canola	cytosol	19.52	41.25
Zm00001d015278_P001	Maize	mitochondrion	18.4	38.99
Zm00001d049871_P001	Maize	cytosol	9.97	37.17
CDX97917	Canola	cytosol	39.47	36.54
CDY19326	Canola	cytosol	39.33	36.41
CDY40502	Canola	cytosol	38.06	35.52
CDY54764	Canola	cytosol	37.08	34.65
Zm00001d023982_P001	Maize	cytosol	16.85	30.85
CDX95838	Canola	cytosol	9.13	25.59
CDX92147	Canola	cytosol	8.71	24.41
CDY63834	Canola	cytosol	11.66	17.51
CDY52243	Canola	cytosol	11.38	17.2
CDY43044	Canola	cytosol	11.52	17.15
CDY43831	Canola	cytosol	11.38	16.8
CDY58500	Canola	cytosol	8.85	15.71
CDX77687	Canola	cytosol	8.85	15.67
CDY28774	Canola	endoplasmic reticulum, plasma membrane	10.81	15.62
CDY64205	Canola	endoplasmic reticulum	10.81	15.62
CDX78809	Canola	cytosol	8.43	15.35
CDX86944	Canola	cytosol	2.81	15.27
CDY44506	Canola	cytosol	8.43	15.15
CDY18435	Canola	cytosol	8.85	14.93
CDY07784	Canola	mitochondrion	8.85	14.55
CDX90439	Canola	cytosol	8.29	14.39
CDY01499	Canola	cytosol	8.15	14.25
CDY69342	Canola	mitochondrion	8.57	13.93
CDX79739	Canola	mitochondrion	8.85	13.91
CDX76193	Canola	cytosol	8.71	13.75
CDY59045	Canola	cytosol	7.58	13.74
CDX74953	Canola	cytosol	8.71	13.72
CDY30849	Canola	cytosol	8.57	13.62
CDX78196	Canola	cytosol	8.29	13.26
CDX73533	Canola	cytosol	8.29	13.23
CDY16083	Canola	cytosol	2.53	7.63
CDY23645	Canola	cytosol	1.69	7.41
CDY26647	Canola	plastid	1.83	7.18
CDY08879	Canola	cytosol	2.81	6.35

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078DHZ3	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlants:CDX86943	ProteinID:CDX86943	ProteinID:CDX86943.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00145759001	InterPro:IPR001164
InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508
PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405
PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF373
SMART:SM00105	SMART:SM00233	SMART:SM00248	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729
SUPFAM:SSF57863	UniParc:UPI0004EEDEF6	SEG:seg	:	:	:

Description

BnaC03g52130D

Coordinates

chrLK031848:-:648658..652325

Molecular Weight (calculated)

80884.4 Da

IEP (calculated)

7.793

GRAVY (calculated)

-0.453

Length

712 amino acids

Sequence
(BLAST)

001: MSTLLQSLLP GLVEHILNDR LVQFVNVDVQ EIKEARKRFD KASITYDQAR EKFLSLRKST RLDVAATIEE DLHSARAAFE QARFHLVSAL SNAEAKKRFE
101: FLEAVSGTVD AHLQHKLIAL GYELLQQMEP FINQVLSYAH QSRECTNYEM ASLNERMQEY KRQVDRETRN LNGSPTGDGM RHNSRSSQKV IEAVMQSAAK
201: GKVQTIRQGY LSKRSSNLRG DWKRRFFILD SRGMLYYYRK PWNWSSGNGN RSSVHKNMTS ENSPGLLSRW LSSHYHDEKP VARLTVNLLT STIKVDADQT
301: DLRFCFRIIS PTKVYTLQAE NAQDQMDWIE KITGVTTSLL SFQTPERTIM RLSTMDGDTF SASESGSVAD LYDIDHAEIG ESTVENNHHR SRFSGCLQQH
401: DMMAKPIDVL TKVLGNEKCA DCGAPEPDWA SLNLGVLICI ECSGIHRNLG VHISKVRSLT LDVKVWEPSV LTLFQSLGNV YVNSVWEELL NSESRSSGTP
501: MSDRPTRKFL ARKPGLSDPI SVKELFIHAK YSERIFVRKE TDSQHFPAVF QEIWENVRAN DKKSVYKHIV CSETDVNALR GQATYTVSLS LWKMMQLEAK
601: EETLKAKIKR IEEEEETSKD CSLLHLACLY ADIGMVELLL QYGAKINATD SKGRTPLHHC IISRRYAIAR LLLMRGGDPN AVDKESNTPV KYALETEVND
701: SELIALLTDS KR

Best Arabidopsis Sequence Match ( AT5G61980.1 )
(BLAST)

001: MHFAKLDDSP MFRQQMQSME ESAELLRLRC LRFYKGCRKY TEGLGEGYDA DIGFVNALES FGGGHNDPVC VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLSDRLLQF VNGDVHEVKE ARKRFDKATI TYDQAREKYL SLRKSTRLDV AATIEEDLHS ARTTFEQARF HLVSALSNAE SKKRFEFLEA VSGTMDAHLR
201: FFKQGYELLH QMEPFINQVL AYAHQSRECA NYEMASLNER MQEYQRQVDR ETRNSCVSPT GDGMRHNSRN SQKVIEAVMQ SAAKGKVQTI RQGYLSKRSS
301: NLRGDWKRRF FILDSRGMLY YYRKPWNWSS GNGSRSVVHR NMASENSPGL LSRWLSSHYH GGVHDEKPVA RHTVNLLTST IKVDADQTDL RFCFRIISPT
401: KVYTLQAENA QDQMDWIEKI TGVIASLLSF QTPERAIMRL STVDGGDTFS ASDSGSLADP YDIEQAESGE STVEHPMTGG NRSRFSGCLQ QHDMVKTEKP
501: IDVLTRVLGN ERCADCGAPE PDWASLNLGV LICIECSGIH RNLGVHISKV RSLTLDVKVW EPSVLTLFQS LGNVYVNSVW EELLNSESRT SSASRSSGTP
601: KSDRPRKLLV RKPGFNDPIS VKELFIHAKY SERIFVRKAI DSQHFQAVFQ EIWENVRAND KKSVYRHIVC SEADVNALRG QASYTVSLPL SKMMQMEETL
701: EAKFKSIEEE FQENPAGYSN SRGDGESMVR EETSNDCSLL HLACLSADIG MVELLLQYGA KINATDSKGR TPLHHCIISR RYAIARLLLM RGGDPNAVDK
801: DSNIPVKYAS QTDLNDSELI ALLTDSKR

Arabidopsis Description

AGD1ADP-ribosylation factor GTPase-activating protein AGD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.