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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G385400.2
TraesCS1B01G411700.3
TraesCS1D01G393000.2
TraesCS4A01G435000.1
TraesCS5A01G056700.2
TraesCS5A01G293000.1
TraesCS5A01G377600.1
TraesCS5B01G060100.2
TraesCS5B01G292200.1
TraesCS5B01G381200.1
TraesCS5D01G067900.2
TraesCS5D01G300300.2
TraesCS5D01G387600.1
TraesCS6B01G443600.1
TraesCS6D01G385300.1
TraesCS7A01G049200.1
TraesCS7A01G263800.2
TraesCS7B01G161800.1
TraesCS7D01G044300.1
TraesCS7D01G264700.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13300.1 TraesCS5A01G056700.2 AT3G63300.1 19363154
AT5G13300.1 TraesCS5A01G377600.1 AT3G63300.1 19363154
AT5G13300.1 TraesCS5B01G060100.2 AT3G63300.1 19363154
AT5G13300.1 TraesCS5B01G381200.1 AT3G63300.1 19363154
AT5G13300.1 TraesCS5D01G067900.2 AT3G63300.1 19363154
AT5G13300.1 TraesCS5D01G387600.1 AT3G63300.1 19363154
AT5G13300.1 TraesCS5A01G293000.1 AT5G13300.1 15743878
AT5G13300.1 TraesCS5B01G292200.1 AT5G13300.1 15743878
AT5G13300.1 TraesCS5D01G300300.2 AT5G13300.1 15743878
AT5G13300.1 TraesCS7A01G263800.2 AT5G13300.1 15743878
AT5G13300.1 TraesCS7B01G161800.1 AT5G13300.1 15743878
AT5G13300.1 TraesCS7D01G264700.1 AT5G13300.1 15743878
AT5G13300.1 TraesCS4A01G435000.1 AT5G26980.1 15743878
AT5G13300.1 TraesCS7A01G049200.1 AT5G26980.1 15743878
AT5G13300.1 TraesCS7D01G044300.1 AT5G26980.1 15743878
AT5G13300.1 TraesCS1A01G385400.2 AT5G42080.1 15923323
AT5G13300.1 TraesCS1B01G411700.3 AT5G42080.1 15923323
AT5G13300.1 TraesCS1D01G393000.2 AT5G42080.1 15923323
AT5G13300.1 TraesCS6B01G443600.1 AT5G42080.1 15923323
AT5G13300.1 TraesCS6D01G385300.1 AT5G42080.1 15923323
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G292200.1 Wheat cytosol 98.92 98.56
TraesCS5D01G300300.2 Wheat cytosol 99.04 97.98
HORVU5Hr1G077570.15 Barley cytosol 97.11 96.42
Os09t0510700-01 Rice cytosol 90.13 89.59
EER99172 Sorghum cytosol 87.85 87.32
Zm00001d021087_P003 Maize cytosol 87.48 86.86
CDX70496 Canola cytosol 53.31 80.11
GSMUA_Achr11P... Banana cytosol 75.57 76.96
TraesCS7A01G263800.2 Wheat cytosol 75.09 75.82
GSMUA_Achr4P00060_001 Banana cytosol 74.97 74.43
KRH45201 Soybean cytosol 71.6 72.3
Solyc12g042180.1.1 Tomato cytosol 19.25 71.43
CDY09784 Canola cytosol 68.35 71.18
VIT_01s0150g00030.t01 Wine grape cytosol 71.24 71.15
PGSC0003DMT400005756 Potato cytosol 69.31 70.5
AT5G13300.1 Thale cress cytosol 69.92 70.25
Solyc05g023750.2.1 Tomato cytosol 68.83 70.01
CDX69650 Canola cytosol 69.31 69.73
Bra006193.1-P Field mustard cytosol 68.11 69.62
KRH01512 Soybean cytosol 70.28 69.61
CDX78515 Canola cytosol 69.55 69.55
Bra008838.1-P Field mustard cytosol 69.07 69.49
GSMUA_Achr7P22530_001 Banana endoplasmic reticulum 60.29 67.7
VIT_17s0000g00310.t01 Wine grape cytosol 62.58 62.88
Solyc03g118260.1.1 Tomato cytosol 59.81 62.12
AT5G61980.1 Thale cress cytosol 61.25 61.47
CDY00242 Canola cytosol 58.0 61.25
Bra010046.1-P Field mustard cytosol 57.04 59.92
Bra029295.1-P Field mustard cytosol 61.85 59.63
CDY30689 Canola cytosol 61.73 59.51
PGSC0003DMT400036762 Potato cytosol 41.28 58.73
CDX86943 Canola cytosol 50.18 58.57
KRH59741 Soybean cytosol 55.96 58.12
Solyc12g042170.1.1 Tomato cytosol 37.67 57.75
KRH63858 Soybean cytosol 54.03 57.2
KRH54108 Soybean cytosol 45.61 51.35
TraesCS6A01G221400.1 Wheat cytosol 43.8 47.71
CDY53619 Canola cytosol 19.13 47.18
TraesCS2A01G203600.1 Wheat cytosol 10.59 18.53
TraesCS1A01G193000.1 Wheat cytosol 7.58 15.56
TraesCS4A01G099400.1 Wheat mitochondrion 7.94 14.16
TraesCS4A01G323700.1 Wheat cytosol, nucleus, peroxisome, plastid 6.86 13.77
CDY08879 Canola cytosol 2.41 6.35
Protein Annotations
Gene3D:1.20.1270.60Gene3D:1.25.40.20MapMan:22.3.4.1Gene3D:3.30.40.160InterPro:AGD1/2/3/4_BAR_plantInterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecOInterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfInterPro:ArfGAP_domInterPro:ArfGAP_dom_sf
InterPro:BAR_domncoils:CoilGO:GO:0003674GO:GO:0005096GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0030234
InterPro:IPR001164InterPro:IPR001849InterPro:IPR002110InterPro:IPR004148InterPro:IPR020683InterPro:IPR027267
InterPro:IPR036770InterPro:IPR038508PFAM:PF00169PFAM:PF01412PFAM:PF12796PFAM:PF16746
InterPro:PH_domainPRINTS:PR00405PFscan:PS50003PFscan:PS50088PFscan:PS50115PFscan:PS50297
PANTHER:PTHR23180PANTHER:PTHR23180:SF242SMART:SM00105SMART:SM00233SMART:SM00248SMART:SM00721
SUPFAM:SSF103657SUPFAM:SSF48403SUPFAM:SSF50729SUPFAM:SSF57863EnsemblPlantsGene:TraesCS5A01G293000EnsemblPlants:TraesCS5A01G293000.1
TIGR:cd00204TIGR:cd07606TIGR:cd13250SEG:seg::
Description
No Description!
Coordinates
chr5A:-:502799105..502808891
Molecular Weight (calculated)
93516.3 Da
IEP (calculated)
7.247
GRAVY (calculated)
-0.560
Length
831 amino acids
Sequence
(BLAST)
001: MYFTRLDDSP MFRKQMQSLE EGADLLRERC LKYHKGCRKY TEGLGEAYDG DIAFASSLEA FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDKLLQF VDMDLHDVKD ARKRFDKASL LYDQARERYL SLKKGTRTDI ATAVEDELHS ARSSFEQARF NLVTALSNIE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL AYAQQSRERS NYEQAALVER MQEFKRQIDR ESRWSPNGMT DSPNGDGIQA IGRSSHKMIE AVMQSASKGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDNR GMLYYYRKQN SRPSSGYSNQ RSSTPTEHGS GLLSRWFSSH YHGGVHDEKS VARHTVNLLT STIKVDADQS DLRFCFRIIS
401: PTKNYTLQAE SAMDQMDWIE KITGVIASLL SSQSPERRLL LSPKGSGHHR TNSESSSFSS STELDHSMSE DFMMEKNSGS GYFEHSRVTQ HHRTSMRPDK
501: PIELLRKVVG NDVCADCGAA EPDWASLNLG VLVCIECSGV HRNLGVHISK VRSLTLDVRV WEPSVINLFQ SLGNTFANTI WEEMLISSSS FDHGDTLRAD
601: GIENTPDNLA VRKPRQSDPI SLKEKFIHAK YAEKDFVRKH SMDETQLAQQ MWDHVSSNNK MEVYSLIVRS NADVNLTYGQ TSFNSALTLG KALLLQEQPS
701: SPSNGSFDRG THEKISPRGS LSPASTSART DELDGCAEGL SLLHLACRVA DIGMVELLLQ YGASVNSTDS RGRTPLHHSI LKGRRVHAKL LLSRGADSQA
801: TDCEGRTALQ YAIDSGTIDD EEILVLLEDP R
Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)
001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC
Arabidopsis Description
AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.