Factsheet for TraesCS6A01G221400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G213800.1	Wheat	cytosol	97.51	97.51
TraesCS6B01G259800.1	Wheat	cytosol	96.33	95.83
HORVU6Hr1G059210.10	Barley	cytosol, plastid	83.62	90.11
Os02t0632500-01	Rice	cytosol, plasma membrane	86.37	86.71
OQU85359	Sorghum	cytosol, mitochondrion, plastid	83.36	75.8
Zm00001d051187_P009	Maize	plastid	62.12	67.23
GSMUA_Achr1P01960_001	Banana	cytosol	64.61	62.96
Solyc04g008660.2.1	Tomato	cytosol	56.62	55.31
CDY40502	Canola	cytosol	54.78	54.78
KRH24228	Soybean	cytosol	55.44	54.51
KRH29237	Soybean	cytosol	55.44	54.51
PGSC0003DMT400076862	Potato	cytosol	9.17	54.26
CDY19326	Canola	cytosol	54.65	54.23
CDX97917	Canola	cytosol	54.52	54.1
Bra019896.1-P	Field mustard	cytosol	54.52	54.03
Bra027124.1-P	Field mustard	cytosol	53.74	53.88
AT1G60860.1	Thale cress	cytosol	54.78	53.87
CDY54764	Canola	cytosol	53.74	53.81
AT1G10870.2	Thale cress	cytosol	54.26	53.08
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	43.25	46.09
TraesCS7A01G263800.2	Wheat	cytosol	47.44	43.99
TraesCS5A01G293000.1	Wheat	cytosol	47.71	43.8
PGSC0003DMT400008126	Potato	cytosol	11.93	42.52
PGSC0003DMT400013119	Potato	cytosol	10.75	39.42
TraesCS2A01G203600.1	Wheat	cytosol	10.09	16.21
TraesCS1A01G193000.1	Wheat	cytosol	6.16	11.6
TraesCS4A01G099400.1	Wheat	mitochondrion	6.68	10.94
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	5.9	10.87

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267
InterPro:IPR036770	InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746
InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297
PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721
SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	EnsemblPlantsGene:TraesCS6A01G221400	EnsemblPlants:TraesCS6A01G221400.1
TIGR:cd00204	TIGR:cd07606	TIGR:cd13250	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:411083900..411102812

Molecular Weight (calculated)

84799.1 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.403

Length

763 amino acids

Sequence
(BLAST)

001: MAAFTKLEDS PMFRKQVNSL EQLTDELKQR CSNLHKGCKK FMGSLDEGYA GDLLFADALE AFGAGRDDPV SVAIGGPVMS KFTTAFRELG TYKELLRSQV
101: EHMLSERLTQ FIXXXXXXXX DCRQRLDRAT MSYDQAREKF VSVRKGTRAE VVTGLEEDLH NGKSAFERSR FNLVHALANI EAKKKYEFLE SISAVMDAHL
201: RYFKQGFELL SQMEPFIHQV LTYAQQSKEM AMNEQDKLAK RIQEFRTQEE IANLRMASNV NTSTSGDGIH VVGLQSYKKI EALMQSTANG QVEIIKQGYL
301: FKRSENLRGE WKRRYFVLDS HGTLYYYGNK GNKQSQGVAS QQTAEPTGVF SRFRFLNPKA SSQGDDSLSC RTINLRTSTI KMDAEENDLR FCFRVITPMK
401: AYTLQAETEA DQKDWIEKIT GVIASLLNSP FSHQPPYGNL AAESHGSASS LDSAASLEES KSSEAHSDAI NHLRNIPGND SCAECRSPDP DWASLNLGIL
501: ICIECSGAHR NLGVHISKVR SLRLDVKIWE PVIIDLFRAL GNDYNNSIWE ALLPKEDQGM DESNSAILFM EKPKPTDAFS IKERFIQSKY VDKLLIAKDA
601: NQITIGILEA IRTNDVRAVY RILVLADASP NMTYDELNND VNHVLPVTDR KLFDPASCEK IEDSGRPEGC LQGCSLLHLA CQHGHPVLVE LLLLMGADIN
701: KRDFHGRTPL HHCVQKSNDA LTKHLLKRGA RTTIKDGGGL TALERRMELG AITDEDLFIL FVR

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.