CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019896.1-P	Field mustard	cytosol	98.44	98.31
CDX97917	Canola	cytosol	97.92	97.92
AT1G10870.2	Thale cress	cytosol	91.55	90.26
CDY40502	Canola	cytosol	79.32	79.95
CDY54764	Canola	cytosol	77.76	78.48
KRH29237	Soybean	cytosol	63.98	63.4
KRH24228	Soybean	cytosol	63.85	63.27
Solyc04g008660.2.1	Tomato	cytosol	60.21	59.28
GSMUA_Achr1P01960_001	Banana	cytosol	56.05	55.04
Os02t0632500-01	Rice	cytosol, plasma membrane	54.1	54.74
TraesCS6A01G221400.1	Wheat	cytosol	54.23	54.65
TraesCS6D01G213800.1	Wheat	cytosol	54.1	54.52
TraesCS6B01G259800.1	Wheat	cytosol	53.97	54.11
Zm00001d051188_P001	Maize	cytosol	9.1	53.03
PGSC0003DMT400076862	Potato	cytosol	8.71	51.94
OQU85359	Sorghum	cytosol, mitochondrion, plastid	55.79	51.13
HORVU6Hr1G059210.10	Barley	cytosol, plastid	46.03	50.0
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	46.16	49.58
PGSC0003DMT400008126	Potato	cytosol	13.39	48.13
Zm00001d051187_P009	Maize	plastid	43.95	47.94
CDX70496	Canola	cytosol	33.03	45.93
CDY71222	Canola	cytosol	5.59	44.79
CDY09784	Canola	cytosol	45.9	44.24
PGSC0003DMT400013119	Potato	cytosol	11.96	44.23
CDX69650	Canola	cytosol	46.16	42.98
CDX78515	Canola	cytosol	46.03	42.6
CDY00242	Canola	cytosol	41.48	40.53
CDX86943	Canola	cytosol	36.41	39.33
CDY30689	Canola	cytosol	42.65	38.05
CDX86944	Canola	cytosol	6.11	35.88
CDY53619	Canola	cytosol	14.04	32.05
CDX95838	Canola	cytosol	8.32	25.2
CDX92147	Canola	cytosol	7.93	24.02
CDY52243	Canola	cytosol	10.27	16.77
CDY43044	Canola	cytosol	10.27	16.53
CDY63834	Canola	cytosol	10.14	16.46
CDY43831	Canola	cytosol	10.27	16.39
CDY28774	Canola	endoplasmic reticulum, plasma membrane	10.27	16.02
CDX77687	Canola	cytosol	8.19	15.67
CDY58500	Canola	cytosol	8.06	15.46
CDY64205	Canola	endoplasmic reticulum	9.62	15.01
CDX78809	Canola	cytosol	7.54	14.83
CDY44506	Canola	cytosol	7.54	14.65
CDY69342	Canola	mitochondrion	8.06	14.16
CDY01499	Canola	cytosol	7.41	14.0
CDX90439	Canola	cytosol	7.41	13.9
CDY07784	Canola	mitochondrion	7.8	13.86
CDY18435	Canola	cytosol	7.54	13.74
CDX76193	Canola	cytosol	7.67	13.08
CDX79739	Canola	mitochondrion	7.67	13.02
CDY30849	Canola	cytosol	7.54	12.95
CDX74953	Canola	cytosol	7.54	12.83
CDX73533	Canola	cytosol	7.41	12.78
CDY59045	Canola	cytosol	6.37	12.47
CDX78196	Canola	cytosol	7.15	12.36
CDY23645	Canola	cytosol	1.43	6.79
CDY26647	Canola	plastid	1.56	6.63
CDY16083	Canola	cytosol	1.95	6.36
CDY08879	Canola	cytosol	2.47	6.03

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	Gene3D:2.30.29.30	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078G1X9
UniProt:A0A078G1X9	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlants:CDY19326	ProteinID:CDY19326
ProteinID:CDY19326.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00008844001	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110
InterPro:IPR004148	InterPro:IPR011993	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508
PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180
PANTHER:PTHR23180:SF244	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657
SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0004EBB395	:	:

Description

BnaC05g08350DBnaC05g08350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1X9]

Coordinates

chrLK032095:-:45378..50516

Molecular Weight (calculated)

86471.7 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.424

Length

769 amino acids

Sequence
(BLAST)

001: MAAFINLEDS PMFQKQVCSL EGTAEELKDR CQKLYKGVKK FMGVLGEASK GESAFADCLE EFGAGHDDPI SLSIGGPVIS KFINTLRELA SYKEFLCSQV
101: EHVLLERLMN FINVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL GQLEPYIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLAANA EISGVNGNRV VGTIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRNNGNKSM GSQHHYSGSS DHTGVFGRFR ARHNRSASLT EGSLGYKTID LRTCLIKLDA EDMDLRLCFR IISPQKTYTL
401: QAENGADRMD WVNKITAAIG TLLNSHFLQQ SPVQYTGSAP PKGVVSMDQS QHNDARRDMG DDVSTILRGI AGNNVCAECN SPDPDWASLN LGVLLCIQCS
501: GVHRNLGVHI SKVRSLTLDV KVWEPTILDL FRNLGNLYCN SLWEGLLHLD DDCENESTLS RASISKPSPD DSFTVKEKYI LAKYLEKALV IKDESKANPS
601: AASRIWEAVQ SRNIREIYRL IVISGDVNII NTKFDDITDV DAYHHADASE EAVKKRRDPT ACQRIKDSNE PGNCLQGCSL LHVACHIGDS VLLELLLQFG
701: ADPNMRDYHG RTPLHHCISS GNHKFAKILL RRGARPSIED DGGLSVLERA MEMGAITDEE LFLLLAECA

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.