CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78196	Canola	cytosol	94.62	94.83
CDY30849	Canola	cytosol	85.43	85.04
CDX76193	Canola	cytosol	85.2	84.26
AT3G53710.2	Thale cress	cytosol	84.08	81.7
CDY07784	Canola	mitochondrion	73.77	75.98
CDX79739	Canola	mitochondrion	75.78	74.61
CDY69342	Canola	mitochondrion	70.63	71.92
CDX74953	Canola	cytosol	72.2	71.24
CDY23645	Canola	cytosol	25.56	70.37
CDY16083	Canola	cytosol	35.2	66.53
CDY18435	Canola	cytosol	59.19	62.56
CDY26647	Canola	plastid	24.66	60.77
CDY71222	Canola	cytosol	8.07	37.5
CDX95838	Canola	cytosol	13.0	22.83
CDX92147	Canola	cytosol	12.78	22.44
CDY01499	Canola	cytosol	20.18	22.11
CDX90439	Canola	cytosol	20.18	21.95
CDY44506	Canola	cytosol	19.28	21.72
CDX78809	Canola	cytosol	18.83	21.48
CDX77687	Canola	cytosol	19.06	21.14
CDY58500	Canola	cytosol	18.61	20.7
CDY59045	Canola	cytosol	17.94	20.36
CDY43831	Canola	cytosol	18.39	17.01
CDY63834	Canola	cytosol	17.94	16.88
CDY43044	Canola	cytosol	17.94	16.74
CDY52243	Canola	cytosol	17.26	16.35
CDY64205	Canola	endoplasmic reticulum	17.71	16.02
CDY28774	Canola	endoplasmic reticulum, plasma membrane	16.82	15.21
CDY53619	Canola	cytosol	9.42	12.46
CDY08879	Canola	cytosol	8.07	11.43
CDY09784	Canola	cytosol	15.25	8.52
CDX78515	Canola	cytosol	15.47	8.3
CDX86943	Canola	cytosol	13.23	8.29
CDX69650	Canola	cytosol	15.25	8.23
CDY00242	Canola	cytosol	13.45	7.62
CDY19326	Canola	cytosol	12.78	7.41
CDX97917	Canola	cytosol	12.78	7.41
CDY30689	Canola	cytosol	13.9	7.19
CDY54764	Canola	cytosol	11.44	6.69
CDY40502	Canola	cytosol	10.76	6.29
CDX70496	Canola	cytosol	6.05	4.88
CDX86944	Canola	cytosol	0.67	2.29

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078CF19	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlants:CDX73533	ProteinID:CDX73533	ProteinID:CDX73533.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00109058001	InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0004EDD156
SEG:seg	:	:	:	:	:

Description

BnaC08g24700D

Coordinates

chrLK031799:+:1013745..1016365

Molecular Weight (calculated)

48070.2 Da

IEP (calculated)

9.572

GRAVY (calculated)

-0.864

Length

446 amino acids

Sequence
(BLAST)

001: MAAAARKLRT LQSQPDNKVC VDCAQKNPQW ASVSYGIFMC LECSGKHRGL GVHISFVRSV TMDSWSEIQI KKMEAGGNER LNSFLAQYGI AKETDIVSKY
101: NSNAASVYRN RIQALAEGSK PWSDPPVVKE AVGGMHKKKP PLGNGNGGWD SWGNDDSYRT SRDMRRNQSE NDFRGLGGGG GGAPVKSKSS EDIYTRSQLE
201: ASAAGKESFF ARRMAENESK PEGLPPSQGG KYVGFGSGSG PVPRRNQQDD VFSAVSQGFG RLSMVAASAA SVVQTGTKEF TSKVKEGGYD HKVSETVNVV
301: ASKTTEIGQR TWGIMKGVMA IASQKVGEYT KEGRTTTWSQ RNESESNGYY QNFGNGNKAA NPSVEGRGSQ SSSSGYYNNS QRSNSWDESK KKEAVASKGS
401: SASNDDDGWT GWNDPKDDVY YQSAGDKKSA GHNGKSDTAW TGGGFH

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.