CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63834	Canola	cytosol	91.68	95.36
Bra002995.1-P	Field mustard	cytosol	91.48	95.15
CDY52243	Canola	cytosol	83.16	87.05
CDY43044	Canola	cytosol	82.76	85.36
CDY43831	Canola	cytosol	81.74	83.61
CDY28774	Canola	endoplasmic reticulum, plasma membrane	82.56	82.56
AT5G54310.1	Thale cress	cytosol	80.73	82.4
CDY71222	Canola	cytosol	14.81	76.04
VIT_19s0014g03510.t01	Wine grape	cytosol	57.0	58.79
Solyc07g063550.2.1	Tomato	cytosol	54.16	56.21
PGSC0003DMT400049649	Potato	cytosol	53.96	56.0
KRH22157	Soybean	cytosol	54.16	55.51
KRH27179	Soybean	cytosol	53.96	54.96
KRH26038	Soybean	cytosol	54.16	53.4
KRH30767	Soybean	nucleus	24.14	48.97
PGSC0003DMT400064425	Potato	cytosol	46.04	48.2
KRH55419	Soybean	cytosol	48.88	46.71
Solyc10g006850.2.1	Tomato	cytosol	46.45	45.8
CDX95838	Canola	cytosol	20.49	39.76
CDX92147	Canola	cytosol	20.49	39.76
Zm00001d016547_P001	Maize	cytosol, plastid	27.99	25.94
Zm00001d046873_P001	Maize	cytosol, plastid	27.99	25.94
Zm00001d051030_P001	Maize	cytosol, plastid	27.99	25.94
CDY07784	Canola	mitochondrion	17.24	19.63
CDX79739	Canola	mitochondrion	17.24	18.76
CDY69342	Canola	mitochondrion	16.63	18.72
CDY44506	Canola	cytosol	15.01	18.69
CDY18435	Canola	cytosol	15.82	18.48
CDX78196	Canola	cytosol	16.63	18.43
CDX78809	Canola	cytosol	14.6	18.41
CDX76193	Canola	cytosol	16.84	18.4
CDX74953	Canola	cytosol	16.63	18.14
CDY30849	Canola	cytosol	16.43	18.08
CDY01499	Canola	cytosol	14.81	17.94
CDX77687	Canola	cytosol	14.6	17.91
CDX73533	Canola	cytosol	16.02	17.71
CDY58500	Canola	cytosol	14.4	17.71
CDX90439	Canola	cytosol	14.6	17.56
CDY59045	Canola	cytosol	12.98	16.29
CDY53619	Canola	cytosol	10.55	15.43
CDY23645	Canola	cytosol	4.26	12.96
CDY16083	Canola	cytosol	6.09	12.71
CDY26647	Canola	plastid	4.46	12.15
CDX86943	Canola	cytosol	15.62	10.81
CDY08879	Canola	cytosol	6.29	9.84
CDY09784	Canola	cytosol	15.82	9.77
CDY00242	Canola	cytosol	15.42	9.66
CDY19326	Canola	cytosol	15.01	9.62
CDX78515	Canola	cytosol	16.02	9.51
CDX97917	Canola	cytosol	14.81	9.49
CDX69650	Canola	cytosol	15.82	9.44
CDY30689	Canola	cytosol	15.62	8.93
CDY40502	Canola	cytosol	12.78	8.26
CDY54764	Canola	cytosol	12.58	8.14
CDX70496	Canola	cytosol	5.68	5.06
CDX86944	Canola	cytosol	0.2	0.76

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	GO:A0A078JFB5	UniProt:A0A078JFB5	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlants:CDY64205	ProteinID:CDY64205	ProteinID:CDY64205.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00040981001
InterPro:IPR001164	InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	SignalP:SignalP-noTM	UniParc:UPI0004EED6E7	SEG:seg

Description

BnaCnng43440DBnaCnng43440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFB5]

Coordinates

chrLK034418:+:27168..30461

Molecular Weight (calculated)

54163.1 Da

IEP (calculated)

7.529

GRAVY (calculated)

-0.555

Length

493 amino acids

Sequence
(BLAST)

001: MSGLPLFRCL FFLRWFEYSL PWCYVFVQIL EGLLKHPENR ECADCKTKGP RWASVNLGIF ICMQCSGIHR SLGVHISKVR SATLDTWLPE QVAFIHSMGN
101: ERANSYWEAE LPPNYDRVGI ENFIRAKYEE KRWVSRGEKA RSPPRVEQER RRSVERTGPL YEHGHSSSPV NLFEEKKTVQ APRTRNSGSA TRISLPVPPQ
201: GPGQVIKPQQ KTESVAAPVE MTKPAVNVPA SEPPKVDFAT DLFNMLSMDE PTANTSEAAP ADDNSWAGFQ SAGNGQTAEK SVTPKPDESM SPPATGIEDL
301: FKDTPTLIAQ QTPQKDVKGD IMSLFEKTNI VSPFAMHQQQ VAMLAQQQAL YMAAAAKAAG GIPNGVNQQA IANALSLASA NWSNTGYQVP GMTNPGGGQA
401: DLQKLMQNMN MNMNMNMNMN MRPGQQQENT LQYPMSSSYG TGQVNPATNG MTPNSTGKPQ SSTSSQPTST TPASQLSKDF DFSSLMDGMF TKH

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.