Factsheet for Solyc07g063550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049649	Potato	cytosol	96.0	96.0
VIT_19s0014g03510.t01	Wine grape	cytosol	65.68	65.27
Solyc10g006850.2.1	Tomato	cytosol	67.58	64.2
KRH22157	Soybean	cytosol	64.21	63.41
KRH27179	Soybean	cytosol	62.74	61.57
KRH26038	Soybean	cytosol	63.16	60.0
Bra002995.1-P	Field mustard	cytosol	59.37	59.49
CDY43044	Canola	cytosol	59.79	59.41
CDY63834	Canola	cytosol	59.16	59.28
CDY52243	Canola	cytosol	58.74	59.24
Bra029030.1-P	Field mustard	cytosol	59.37	59.0
CDY43831	Canola	cytosol	59.79	58.92
Bra022711.1-P	Field mustard	cytosol	57.89	58.26
AT5G54310.1	Thale cress	cytosol	58.95	57.97
KRH30767	Soybean	nucleus	28.63	55.97
CDY64205	Canola	endoplasmic reticulum	56.21	54.16
CDY28774	Canola	endoplasmic reticulum, plasma membrane	55.58	53.55
KRH55419	Soybean	cytosol	57.05	52.52
Solyc03g098500.2.1	Tomato	nucleus	24.21	46.37
Solyc03g006610.2.1	Tomato	cytosol	38.32	39.06
Zm00001d016547_P001	Maize	cytosol, plastid	30.95	27.63
Zm00001d046873_P001	Maize	cytosol, plastid	30.95	27.63
Zm00001d051030_P001	Maize	cytosol, plastid	30.95	27.63
Solyc08g005070.2.1	Tomato	cytosol	17.68	20.9
Solyc08g076920.2.1	Tomato	nucleus	17.05	19.66
Solyc10g084690.1.1	Tomato	mitochondrion	18.11	18.74
Solyc09g010520.2.1	Tomato	nucleus	17.26	17.56
Solyc12g042170.1.1	Tomato	cytosol	17.68	15.5
Solyc05g023750.2.1	Tomato	cytosol	19.79	11.51
Solyc03g118260.1.1	Tomato	cytosol	18.74	11.12
Solyc04g008660.2.1	Tomato	cytosol	17.47	10.63
Solyc12g042180.1.1	Tomato	cytosol	1.05	2.23

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4CH38	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc07g063550.2	EnsemblPlants:Solyc07g063550.2.1
UniParc:UPI000276BE4D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:65997955..66004916

Molecular Weight (calculated)

51374.4 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.553

Length

475 amino acids

Sequence
(BLAST)

001: MNEKANVTKE LNAKHRKILE GLLKLPENRE CADCKAKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIHSMGNE RSNSFWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVPKDGIQK SPSRVQEERA SVQWQQNNDR SGRIHAASSG CASDERKNIQ ASKVKQDVPA ARVSIPVPPR GPEHVTSGQV
201: ANQTSQKAEP VAVTEPAKQV PEAASPPKVD YATDLFDMLS MDCPTDNGSE AASTDDNSWA GFQSAQEATK AENTGVTNSV DQKKSQSAAA SGIEDLFKDL
301: PSIVPSASSQ KPQKDAKNDI MSLFDKSNIV SPFAMHQQQL AMLAQQQSLL MAAAAAGGAV RLPVNAQQST NGTNMVNQNW PNLGYQFPGV IMPAAGKTEL
401: EKYMQVGNMG PAHVVGNSVP IPASSFYSMG QNTSSNGIVP PGPSKQAATP ISSSSTQSTK EFDFSSLTQG MFTKR

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.