Factsheet for Solyc08g005070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002955	Potato	cytosol	95.52	94.58
Solyc08g076920.2.1	Tomato	nucleus	80.85	78.88
VIT_02s0012g01330.t01	Wine grape	cytosol	74.38	73.83
KRH75607	Soybean	cytosol	72.39	72.21
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	72.14	71.96
GSMUA_Achr11P...	Banana	cytosol	68.16	68.16
AT2G35210.1	Thale cress	cytosol	64.68	65.82
Bra013265.1-P	Field mustard	cytosol	64.18	65.48
AT5G46750.1	Thale cress	cytosol	65.42	65.42
CDX78809	Canola	cytosol	63.43	65.22
CDY44506	Canola	cytosol	64.18	65.15
GSMUA_Achr2P18150_001	Banana	cytosol	65.42	65.1
Os03t0854100-01	Rice	cytosol	66.67	65.05
GSMUA_Achr4P21720_001	Banana	cytosol	65.67	65.02
EER90493	Sorghum	cytosol	67.16	64.9
CDX90439	Canola	cytosol	66.17	64.88
GSMUA_Achr4P28870_001	Banana	cytosol	65.17	64.85
Zm00001d012827_P002	Maize	cytosol	67.91	64.85
CDY58500	Canola	cytosol	64.68	64.84
Bra024999.1-P	Field mustard	cytosol	58.71	64.66
AT4G17890.1	Thale cress	cytosol	66.42	64.65
CDX77687	Canola	cytosol	64.43	64.43
EER91883	Sorghum	cytosol	65.17	64.37
CDY01499	Canola	cytosol	65.17	64.37
Zm00001d034885_P002	Maize	cytosol	66.17	63.94
Os10t0574800-01	Rice	plasma membrane	64.68	63.88
TraesCS1A01G193000.1	Wheat	cytosol	63.93	63.46
TraesCS1D01G196700.1	Wheat	cytosol	63.68	63.21
CDY59045	Canola	cytosol	60.95	62.34
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.18	62.32
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.18	62.32
Bra017330.1-P	Field mustard	cytosol	60.45	61.68
Zm00001d047020_P002	Maize	cytosol	65.42	59.77
TraesCS5B01G554600.1	Wheat	cytosol, plastid	64.18	55.84
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	63.93	54.56
Zm00001d030031_P002	Maize	plastid	65.42	54.45
HORVU5Hr1G123590.1	Barley	cytosol	63.43	52.36
HORVU1Hr1G047800.23	Barley	plastid	21.89	26.04
Bra012634.1-P	Field mustard	cytosol	65.92	25.9
Solyc03g098500.2.1	Tomato	nucleus	12.94	20.97
Solyc10g084690.1.1	Tomato	mitochondrion	21.64	18.95
Solyc09g010520.2.1	Tomato	nucleus	21.64	18.63
Solyc07g063550.2.1	Tomato	cytosol	20.9	17.68
Solyc10g006850.2.1	Tomato	cytosol	19.4	15.6
Solyc03g006610.2.1	Tomato	cytosol	16.17	13.95
Solyc12g042170.1.1	Tomato	cytosol	13.43	9.96
Solyc04g008660.2.1	Tomato	cytosol	16.17	8.32
Solyc03g118260.1.1	Tomato	cytosol	15.17	7.62
Solyc05g023750.2.1	Tomato	cytosol	14.68	7.22
Solyc12g042180.1.1	Tomato	cytosol	0.75	1.34

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4CHZ9	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc08g005070.2	EnsemblPlants:Solyc08g005070.2.1
UniParc:UPI000276B689	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:51697..56135

Molecular Weight (calculated)

43683.1 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.555

Length

402 amino acids

Sequence
(BLAST)

001: MAADSFTDKN AVFRKLKAKP ENKMCFDCNA KNPTWASVTY GIFLCIDCSA THRSLGVHIS FVRSTNLDSW SPDQLKMMYF GGNNRAQVFF KQHGWTDGGK
101: IEAKYTSRAA ELYKQLLSKE VAKSKAEDTG LPTSPVASQL VQTTNGFSNI KISEAPKETS LFKDETPEVS ASPKASQSMF TTSIKKPIVA KKSGKPGGLG
201: ARKLTKKTSE SLYDQKPEEP PVQVSSSNPA SSAPTGGSSF TSRFEYTDNV QSSEMSSGRV LNHVSPPMSS NFFADYGMES GFTKKSSKSS KVQIEETDDA
301: RKKFTNAKAI SSAQFFGDQS KAEMEASVSL KKFSGSSAIS SADLFGDDDR SDLDLTAGDL INRISFQAQQ DMSSLKNMAG ETGKRLGSFA STLISDFQDR
401: IL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.