CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0574800-01	Rice	plasma membrane	86.0	86.0
Zm00001d047020_P002	Maize	cytosol	92.38	85.45
TraesCS1A01G193000.1	Wheat	cytosol	83.05	83.46
TraesCS1D01G196700.1	Wheat	cytosol	82.8	83.21
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	83.05	71.76
GSMUA_Achr4P28870_001	Banana	cytosol	68.3	68.81
GSMUA_Achr2P18150_001	Banana	cytosol	68.3	68.81
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	68.06	68.73
KRH75607	Soybean	cytosol	67.81	68.49
VIT_02s0012g01330.t01	Wine grape	cytosol	67.81	68.15
EER90493	Sorghum	cytosol	68.06	66.59
GSMUA_Achr4P21720_001	Banana	cytosol	66.09	66.26
GSMUA_Achr11P...	Banana	cytosol	64.62	65.42
Solyc08g005070.2.1	Tomato	cytosol	64.37	65.17
PGSC0003DMT400002955	Potato	cytosol	63.88	64.04
Solyc08g076920.2.1	Tomato	nucleus	64.13	63.35
Bra013265.1-P	Field mustard	cytosol	61.18	63.2
CDX78809	Canola	cytosol	60.69	63.17
CDY44506	Canola	cytosol	61.18	62.88
PGSC0003DMT400045159	Potato	cytosol	63.64	62.86
CDX77687	Canola	cytosol	61.92	62.69
CDY58500	Canola	cytosol	61.67	62.59
AT5G46750.1	Thale cress	cytosol	61.18	61.94
Bra024999.1-P	Field mustard	cytosol	55.28	61.64
CDY01499	Canola	cytosol	61.18	61.18
CDX90439	Canola	cytosol	61.43	60.98
AT4G17890.1	Thale cress	cytosol	61.18	60.29
AT2G35210.1	Thale cress	cytosol	57.74	59.49
CDY59045	Canola	cytosol	55.53	57.51
Bra017330.1-P	Field mustard	cytosol	54.79	56.6
Bra012634.1-P	Field mustard	cytosol	61.43	24.44
EER92462	Sorghum	mitochondrion	20.88	18.6
EER99548	Sorghum	cytosol	19.41	16.7
OQU80812	Sorghum	cytosol	16.71	8.25
EER99172	Sorghum	cytosol	15.97	7.78
OQU85359	Sorghum	cytosol, mitochondrion, plastid	12.78	6.2

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	EntrezGene:8055144	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
UniProt:C5WRB2	EnsemblPlants:EER91883	ProteinID:EER91883	ProteinID:EER91883.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381
SMART:SM00105	EnsemblPlantsGene:SORBI_3001G287800	SUPFAM:SSF57863	unigene:Sbi.3800	UniParc:UPI0001A823D1	RefSeq:XP_002464885.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:56384458..56388858

Molecular Weight (calculated)

44230.6 Da

IEP (calculated)

9.670

GRAVY (calculated)

-0.645

Length

407 amino acids

Sequence
(BLAST)

001: MAATEALADK NAVFRKLRAK SDNKMCFDCN AKNPTWASVT YGVFLCIDCS AVHRSLGVHV SFVRSTNLDS WTPEQLRMMV YGGNNRAQAF FKQHGWTDGG
101: KIEAKYTSRA ADLYRQLLAK EVAKSSTEDG NNSWPSSPVA VSQGPNQAPA FPDLKLTEVS KENVSEKKEP EIVRSPRAPT HSFKKPIGAK KPGNKTGGLG
201: ARKLTSKPNE SLYEQKPEEP APILPSVTES TATRSKPHTS RFEYVENAPA APKTGSSSED NHMSGHVAPP KSSNFFAEFG MDSGYHKKST SSSSKVQIEE
301: SSEARQKFSN AKSISSSQFF GDQASFEKDA QVSLQKFSGS SAISSADLFG HPANNPRVDL SASDLINRIS FQATQDLSSL KNMAGETGKK LTSMASNIIT
401: DLQDRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.