CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034885_P002	Maize	cytosol	95.43	95.43
Zm00001d012827_P002	Maize	cytosol	93.99	92.87
Os03t0854100-01	Rice	cytosol	83.17	83.98
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	78.61	78.99
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	78.12	78.5
TraesCS5B01G554600.1	Wheat	cytosol, plastid	77.88	70.13
KRH75607	Soybean	cytosol	66.59	68.73
GSMUA_Achr11P...	Banana	cytosol	66.35	68.66
GSMUA_Achr4P21720_001	Banana	cytosol	66.83	68.47
EER91883	Sorghum	cytosol	66.59	68.06
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	65.62	67.74
GSMUA_Achr4P28870_001	Banana	cytosol	65.62	67.57
GSMUA_Achr2P18150_001	Banana	cytosol	65.38	67.33
Solyc08g005070.2.1	Tomato	cytosol	64.9	67.16
VIT_02s0012g01330.t01	Wine grape	cytosol	65.38	67.16
HORVU5Hr1G123590.1	Barley	cytosol	78.12	66.74
PGSC0003DMT400002955	Potato	cytosol	63.94	65.52
Solyc08g076920.2.1	Tomato	nucleus	63.7	64.32
PGSC0003DMT400045159	Potato	cytosol	63.22	63.84
CDX77687	Canola	cytosol	59.38	61.44
CDY58500	Canola	cytosol	58.89	61.1
CDY44506	Canola	cytosol	57.93	60.86
Bra024999.1-P	Field mustard	cytosol	53.37	60.82
AT4G17890.1	Thale cress	cytosol	60.1	60.53
CDX90439	Canola	cytosol	59.62	60.49
AT5G46750.1	Thale cress	cytosol	58.17	60.2
CDY01499	Canola	cytosol	58.89	60.2
Bra013265.1-P	Field mustard	cytosol	56.97	60.15
CDX78809	Canola	cytosol	56.25	59.85
AT2G35210.1	Thale cress	cytosol	55.05	57.97
CDY59045	Canola	cytosol	54.33	57.51
Bra017330.1-P	Field mustard	cytosol	54.09	57.11
HORVU1Hr1G047800.23	Barley	plastid	23.08	28.4
Bra012634.1-P	Field mustard	cytosol	59.86	24.34
EER92462	Sorghum	mitochondrion	21.63	19.69
EER99548	Sorghum	cytosol	20.19	17.76
EER99172	Sorghum	cytosol	15.14	7.54
OQU80812	Sorghum	cytosol	14.9	7.52
OQU85359	Sorghum	cytosol, mitochondrion, plastid	12.02	5.96

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	EntrezGene:8060851	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
UniProt:C5WS02	EnsemblPlants:EER90493	ProteinID:EER90493	ProteinID:EER90493.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381
SMART:SM00105	EnsemblPlantsGene:SORBI_3001G007600	SUPFAM:SSF57863	unigene:Sbi.14389	UniParc:UPI0001A824CC	RefSeq:XP_002463495.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:732601..736502

Molecular Weight (calculated)

44984.8 Da

IEP (calculated)

9.858

GRAVY (calculated)

-0.579

Length

416 amino acids

Sequence
(BLAST)

001: MATAFDAFTD KNAVFRRLKA KPENKMCFDC NAKNPTWASV TYGIFLCLDC SAVHRSLGVH ITFVRSTNLD SWTPDQLKMM AFGGNNRAHA FFKQHGWTDG
101: GKVEAKYTSR AAELYRQMLN KEVAKSAMTD NALPSSPVTS EASKPSDDFP EFKLPDVPAP LAENLNGKHE PKSPKAAPRS PKAATHPTFA TSVKKPIGAK
201: KVGAKTGGLG VRKLTTKPNE SLYEQKPEEP KPAVPALAAS TTAKGGPSLH SRFEYVENVP SADLRTGGSG SRVTGHVAPP KSSDFFQEYG MGNGFQKKSS
301: NASKTQIEET DEARKKFSNA KAISSSQFFG TQNREEKEAQ LSLQKFAGSS SISSADLFGR NDVDNSNLDL SAADLINRIS FQASQDLSSL KDIAGETGKK
401: LTSLASNFIS DLDRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.