CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87742
EER99172
EES01270
EES19921
KXG37970
OQU79534
OQU80812
OQU86127

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	KXG37970	AT3G63300.1	19363154
AT5G13300.1	OQU79534	AT3G63300.1	19363154
AT5G13300.1	EER99172	AT5G13300.1	15743878
AT5G13300.1	OQU80812	AT5G13300.1	15743878
AT5G13300.1	EER87742	AT5G26980.1	15743878
AT5G13300.1	OQU86127	AT5G26980.1	15743878
AT5G13300.1	EES01270	AT5G42080.1	15923323
AT5G13300.1	EES19921	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049872_P001	Maize	cytosol	64.81	97.27
Zm00001d031667_P006	Maize	cytosol	96.6	96.72
Zm00001d015981_P001	Maize	peroxisome	17.6	94.77
Zm00001d009353_P001	Maize	cytosol	13.23	90.08
Zm00001d049871_P001	Maize	cytosol	20.27	87.43
Zm00001d004245_P003	Maize	cytosol	19.78	84.9
Os08t0537600-01	Rice	plasma membrane	84.34	83.63
TraesCS7A01G263800.2	Wheat	cytosol	83.13	83.23
HORVU7Hr1G055220.21	Barley	cytosol	83.5	82.79
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	82.52	80.28
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	82.52	80.28
EER99172	Sorghum	cytosol	77.43	76.32
CDX70496	Canola	cytosol	50.49	75.23
Solyc12g042180.1.1	Tomato	cytosol	19.78	72.77
GSMUA_Achr11P...	Banana	cytosol	71.48	72.18
GSMUA_Achr4P00060_001	Banana	cytosol	71.0	69.89
KRH45201	Soybean	cytosol	67.96	68.04
PGSC0003DMT400005756	Potato	cytosol	67.23	67.81
VIT_01s0150g00030.t01	Wine grape	cytosol	68.2	67.55
Solyc05g023750.2.1	Tomato	cytosol	66.75	67.32
CDY09784	Canola	cytosol	65.05	67.17
AT5G13300.1	Thale cress	cytosol	66.5	66.26
CDX69650	Canola	cytosol	65.9	65.74
Bra008838.1-P	Field mustard	cytosol	65.66	65.5
CDX78515	Canola	cytosol	65.78	65.22
KRH01512	Soybean	cytosol	66.38	65.2
Bra006193.1-P	Field mustard	cytosol	64.08	64.94
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	55.83	62.16
VIT_17s0000g00310.t01	Wine grape	cytosol	60.32	60.1
Solyc03g118260.1.1	Tomato	cytosol	58.13	59.88
AT5G61980.1	Thale cress	cytosol	59.95	59.66
CDY00242	Canola	cytosol	56.31	58.96
Bra010046.1-P	Field mustard	cytosol	55.83	58.15
Bra029295.1-P	Field mustard	cytosol	60.44	57.77
CDY30689	Canola	cytosol	60.32	57.66
KRH63858	Soybean	cytosol	54.61	57.32
Zm00001d015278_P001	Maize	mitochondrion	23.06	56.55
KRH59741	Soybean	cytosol	54.25	55.88
CDX86943	Canola	cytosol	47.82	55.34
PGSC0003DMT400036762	Potato	cytosol	38.71	54.62
Solyc12g042170.1.1	Tomato	cytosol	35.44	53.87
KRH54108	Soybean	cytosol	46.12	51.49
Zm00001d023982_P001	Maize	cytosol	22.21	47.04
OQU85359	Sorghum	cytosol, mitochondrion, plastid	44.3	43.5
CDY53619	Canola	cytosol	17.35	42.43
EER99548	Sorghum	cytosol	11.77	20.51
EER91883	Sorghum	cytosol	8.25	16.71
EER90493	Sorghum	cytosol	7.52	14.9
EER92462	Sorghum	mitochondrion	7.4	13.35
CDY08879	Canola	cytosol	2.79	7.3

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	EntrezGene:8060928	UniProt:A0A1Z5RAM9
InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849
InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508
EnsemblPlants:OQU80812	ProteinID:OQU80812	ProteinID:OQU80812.1	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796
PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF242	SMART:SM00105	SMART:SM00233	SMART:SM00248
SMART:SM00721	EnsemblPlantsGene:SORBI_3007G189100	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863
UniParc:UPI0001A87D32	RefSeq:XP_002444676.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:62179222..62189359

Molecular Weight (calculated)

92899.6 Da

IEP (calculated)

7.055

GRAVY (calculated)

-0.554

Length

824 amino acids

Sequence
(BLAST)

001: MYFSKLDDSP MFRTQIQSLE ESAELLRERC LKFHKGCRKY TEGLGEAYDG DIAFASSLET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDRLLNF VDIDLHDVKD AHKRFDKASL LYDQIREKYL SLKKGTRPDI TTAIEDELHS ARSSFEQARF NLVTSLSHVE AKKRFEFLEA VSATMDSHLR
201: YFKQGYELLH QMEPYINQVL AYAQQSRERA NKEQASLVER MHEYKRQIDR ESRSSINGLN DSYNGDGIQT IGRSSHKQIE AVMQSTSKGK VQTIRQGYLS
301: KRSSNLRADW KRRFFVLDSR GMLYYYRKQI TRPPAGCSMQ RSVNPPEHGS GLLSRLFSSH YHGIIHDEKS VARHTVNLLT STIKVDAEQS DLRFCFRIIS
401: PTKIYTLQAE SAVDQMDWIE KITGVIASLL SSQSPEQCFL SSPKGSGHDR STSDGSSFTS SVEFEPSTID DLVLEKYSGN GQHDVRGTHH HRTSVKPEKP
501: IDLLRKVDGN NMCADCGASE PDWASLNLGA LLCIECSGVH RNLGVHISKV RSLTLDVRVW EPSVINLFQS LGNMFVNNIW EEMLPDDNSS ADGSDTSQYL
601: SVSKPKHKDV FSAKEKFIHA KYVNKEFIRN HSMDENQLAQ QMWNSVAAND KKAAYSLIVR SRPNVNLVYG EMPSSPFLTL GKALQQEQPA SPHDGSPRFF
701: DCNSHDKISP REPLSPASTS SRTDDMEDTC EGLSLFHLAC RVADVGMVEL LLQYGASVNM NDSRGRTPLH HCILKGRHQH AKLLLSRGAD SQAMDRDGRT
801: ALQYAIDSGT SDEDILALLE DHSR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.