Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | EER99172 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | OQU80812 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030661_P001 | Maize | cytosol | 81.97 | 86.58 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 75.0 | 77.87 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 74.8 | 77.49 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 74.18 | 77.19 |
| KXG37970 | Sorghum | cytosol | 72.95 | 75.58 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 66.8 | 71.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.78 | 70.7 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 52.87 | 70.3 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 63.73 | 69.89 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 13.11 | 65.98 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 61.48 | 65.08 |
| KRG91356 | Soybean | cytosol | 60.86 | 62.4 |
| KRH67258 | Soybean | nucleus | 48.77 | 62.3 |
| KRH35470 | Soybean | nucleus | 60.45 | 61.97 |
| Solyc09g082580.2.1 | Tomato | cytosol | 59.02 | 61.94 |
| PGSC0003DMT400016521 | Potato | nucleus | 59.02 | 61.8 |
| KRH69115 | Soybean | nucleus | 60.86 | 61.11 |
| KRH31661 | Soybean | nucleus | 60.45 | 61.08 |
| Bra036892.1-P | Field mustard | nucleus | 57.38 | 59.83 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 56.97 | 59.78 |
| CDY36869 | Canola | nucleus, plastid | 21.31 | 59.77 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 52.05 | 59.76 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 58.4 | 59.62 |
| Bra039719.1-P | Field mustard | nucleus | 56.76 | 59.57 |
| CDY16256 | Canola | cytosol | 47.95 | 58.5 |
| AT5G43870.1 | Thale cress | plastid | 54.3 | 58.5 |
| AT3G22810.1 | Thale cress | cytosol | 56.56 | 58.47 |
| CDX94730 | Canola | cytosol | 53.69 | 58.35 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 56.76 | 58.32 |
| CDY14898 | Canola | cytosol | 53.89 | 58.31 |
| CDY29764 | Canola | nucleus | 52.87 | 58.24 |
| Bra036001.1-P | Field mustard | nucleus | 53.69 | 58.09 |
| CDY22328 | Canola | plastid | 53.69 | 58.09 |
| KRH32056 | Soybean | nucleus | 56.76 | 57.59 |
| PGSC0003DMT400049811 | Potato | plastid | 56.56 | 57.14 |
| KRG95576 | Soybean | nucleus | 56.76 | 57.11 |
| KRH71381 | Soybean | nucleus | 55.94 | 56.76 |
| Solyc09g065590.2.1 | Tomato | plastid | 56.56 | 56.67 |
| CDX93914 | Canola | nucleus | 56.76 | 56.42 |
| Bra040444.1-P | Field mustard | plastid | 56.15 | 56.38 |
| AT3G63300.1 | Thale cress | plastid | 57.17 | 56.02 |
| CDY53717 | Canola | nucleus | 56.35 | 56.01 |
| Bra023803.1-P | Field mustard | cytosol | 52.46 | 55.65 |
| CDX96925 | Canola | plastid | 53.69 | 53.47 |
| CDY46598 | Canola | mitochondrion | 52.25 | 52.8 |
| CDY36868 | Canola | nucleus | 24.8 | 52.61 |
| OQU86061 | Sorghum | cytosol | 34.84 | 39.81 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 29.71 | 35.28 |
| KXG31087 | Sorghum | nucleus | 30.53 | 34.89 |
| OQU81872 | Sorghum | cytosol | 23.77 | 28.78 |
Protein Annotations
| EnsemblPlants:OQU79534 | EnsemblPlantsGene:SORBI_3008G159400 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 |
| PFAM:PF05703 | PFAM:PF08458 | ProteinID:OQU79534 | ProteinID:OQU79534.1 | SEG:seg | UniParc:UPI000B425585 |
| UniProt:A0A1Z5R6Y4 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:59250080..59256085
Molecular Weight (calculated)
50689.7 Da
IEP (calculated)
9.895
GRAVY (calculated)
-0.309
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDAGAARTR RAGSGGGGGG DLPLRPPEPP RDPLEFLSRS WSASAADVSR ALGGAPAPAV AVAAAISEDV AAELDADSAA GPASGTSFSF ASAATSQLVL
101: DRIMTPSEVS PLTSGRLSHS SGPLNGGGSL SDSPPVSPEI DDTKFCRAVS TPKPQPYARG GSKTVGRWLK DRKEKRKEET RAHNAQVHAA VSVAAVAAAV
201: AAVAAATAAA SSSSSGKDNG RGARTDMAVA SAATLVAAQC VEAAEALGAD REHLAAAVGS AVNVRTPGDV VTITAAAATA LRGAATLRAR ALKEVWNVAA
301: VIPVEKGAVG GGGGGGQHHQ HGGHKHDGQP KHHHHHQQQR EVESSNSSSS CFSDELLLGE ENNFLGICTQ DLLARGTELL KRTRKGSLHW KVVSVYINRA
401: GLVMLKMKSK HVGGTITKKK KSEVVDVCRD VAAWPGRHLL EGGEQRRYFG LRTAEQRVIE FECGSQREYE LWTKGVARLL AIVDGRKR
101: DRIMTPSEVS PLTSGRLSHS SGPLNGGGSL SDSPPVSPEI DDTKFCRAVS TPKPQPYARG GSKTVGRWLK DRKEKRKEET RAHNAQVHAA VSVAAVAAAV
201: AAVAAATAAA SSSSSGKDNG RGARTDMAVA SAATLVAAQC VEAAEALGAD REHLAAAVGS AVNVRTPGDV VTITAAAATA LRGAATLRAR ALKEVWNVAA
301: VIPVEKGAVG GGGGGGQHHQ HGGHKHDGQP KHHHHHQQQR EVESSNSSSS CFSDELLLGE ENNFLGICTQ DLLARGTELL KRTRKGSLHW KVVSVYINRA
401: GLVMLKMKSK HVGGTITKKK KSEVVDVCRD VAAWPGRHLL EGGEQRRYFG LRTAEQRVIE FECGSQREYE LWTKGVARLL AIVDGRKR
001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.