Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 81.57 | 81.05 |
| Bra023803.1-P | Field mustard | cytosol | 76.27 | 78.26 |
| CDY46598 | Canola | mitochondrion | 76.48 | 74.74 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 70.55 | 72.23 |
| KRG91356 | Soybean | cytosol | 71.4 | 70.8 |
| KRH35470 | Soybean | nucleus | 71.19 | 70.59 |
| PGSC0003DMT400016521 | Potato | nucleus | 67.8 | 68.67 |
| Solyc09g082580.2.1 | Tomato | cytosol | 67.37 | 68.39 |
| KRH69115 | Soybean | nucleus | 70.13 | 68.11 |
| KRH31661 | Soybean | nucleus | 69.49 | 67.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.81 | 63.22 |
| AT5G43870.1 | Thale cress | plastid | 60.38 | 62.91 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 59.11 | 62.7 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 60.17 | 62.56 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 47.88 | 61.58 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 58.47 | 60.13 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 58.69 | 59.7 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 58.47 | 59.61 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 58.47 | 59.48 |
| KXG37970 | Sorghum | cytosol | 58.05 | 58.17 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 57.42 | 57.78 |
| Zm00001d033283_P001 | Maize | cytosol | 57.63 | 57.63 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 58.47 | 56.56 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 56.14 | 56.26 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 55.93 | 56.17 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 55.72 | 56.08 |
| Zm00001d030661_P001 | Maize | cytosol | 54.87 | 56.06 |
| AT3G63300.1 | Thale cress | plastid | 58.26 | 55.22 |
| Os12t0604200-00 | Rice | nucleus | 43.01 | 54.72 |
| Os03t0635800-01 | Rice | nucleus | 43.64 | 54.5 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 10.59 | 51.55 |
| AT4G32780.2 | Thale cress | cytosol | 33.26 | 36.85 |
| AT4G17350.1 | Thale cress | cytosol | 29.66 | 34.57 |
| AT5G47440.1 | Thale cress | nucleus | 28.39 | 33.0 |
| AT4G16670.1 | Thale cress | cytosol | 27.33 | 30.07 |
| AT5G57770.1 | Thale cress | cytosol | 25.21 | 29.31 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821852 | ProteinID:AEE76679.1 | ArrayExpress:AT3G22810 | EnsemblPlantsGene:AT3G22810 | RefSeq:AT3G22810 |
| TAIR:AT3G22810 | RefSeq:AT3G22810-TAIR-G | EnsemblPlants:AT3G22810.1 | TAIR:AT3G22810.1 | ProteinID:BAB01256.1 | InterPro:DUF828 |
| RefSeq:NP_188920.1 | PFAM:PF05703 | PFAM:PF08458 | InterPro:PH_pln | PO:PO:0000005 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF16 | UniProt:Q9LUI0 | UniParc:UPI00000A3DAF |
| SEG:seg | : | : | : | : | : |
Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
Coordinates
chr3:+:8068418..8071795
Molecular Weight (calculated)
51269.8 Da
IEP (calculated)
9.538
GRAVY (calculated)
-0.328
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.