Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64500 | Canola | cytosol | 89.63 | 90.07 |
| Bra026246.1-P | Field mustard | nucleus | 89.63 | 90.07 |
| CDY65120 | Canola | cytosol | 89.38 | 89.83 |
| CDY09634 | Canola | nucleus | 89.88 | 89.0 |
| AT5G47440.1 | Thale cress | nucleus | 78.52 | 78.33 |
| KRH04152 | Soybean | nucleus | 55.56 | 57.25 |
| KRH28119 | Soybean | nucleus | 54.57 | 56.52 |
| KRH57434 | Soybean | nucleus | 53.83 | 55.33 |
| PGSC0003DMT400012161 | Potato | nucleus | 52.35 | 54.36 |
| Solyc08g078500.2.1 | Tomato | cytosol | 52.35 | 54.36 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 52.35 | 54.22 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 40.25 | 48.66 |
| GSMUA_Achr11P... | Banana | nucleus | 47.16 | 48.23 |
| AT4G16670.1 | Thale cress | cytosol | 50.12 | 47.32 |
| Os10t0560000-01 | Rice | cytosol | 43.7 | 46.7 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 42.72 | 44.82 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 42.47 | 44.68 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 42.96 | 44.62 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 42.96 | 44.62 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 42.22 | 44.53 |
| Zm00001d000175_P001 | Maize | plastid | 43.21 | 44.08 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 41.48 | 43.86 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 42.96 | 43.61 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 41.98 | 43.59 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.23 | 43.49 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.49 | 42.6 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 42.72 | 42.09 |
| Zm00001d029886_P001 | Maize | vacuole | 40.49 | 41.41 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 40.25 | 41.16 |
| KXG31087 | Sorghum | nucleus | 42.96 | 40.75 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.73 | 40.72 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 37.28 | 40.7 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 40.25 | 39.95 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 39.51 | 39.8 |
| Zm00001d051361_P001 | Maize | plastid | 41.48 | 39.16 |
| AT3G22810.1 | Thale cress | cytosol | 34.57 | 29.66 |
| AT5G43870.1 | Thale cress | plastid | 32.84 | 29.36 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 34.32 | 29.26 |
| AT4G32780.2 | Thale cress | cytosol | 29.38 | 27.93 |
| AT3G63300.1 | Thale cress | plastid | 33.58 | 27.31 |
| AT5G57770.1 | Thale cress | cytosol | 22.72 | 22.66 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827447 | ProteinID:AEE83879.1 | ArrayExpress:AT4G17350 | EnsemblPlantsGene:AT4G17350 | RefSeq:AT4G17350 |
| TAIR:AT4G17350 | RefSeq:AT4G17350-TAIR-G | EnsemblPlants:AT4G17350.1 | TAIR:AT4G17350.1 | Unigene:At.48870 | EMBL:BT015941 |
| EMBL:BT025551 | InterPro:DUF828 | InterPro:IPR001849 | RefSeq:NP_193466.2 | PFAM:PF05703 | PFAM:PF08458 |
| InterPro:PH_domain | InterPro:PH_pln | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31351 | PANTHER:PTHR31351:SF2 | UniProt:Q5U1F1 | SMART:SM00233 | UniParc:UPI0000196CE3 | SEG:seg |
Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
Coordinates
chr4:+:9701132..9703574
Molecular Weight (calculated)
44530.8 Da
IEP (calculated)
9.259
GRAVY (calculated)
-0.448
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.