Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 95.57 | 95.57 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 94.53 | 94.29 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 89.58 | 89.82 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 96.09 | 88.92 |
| Os10t0560000-01 | Rice | cytosol | 75.0 | 75.99 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 73.96 | 69.1 |
| Zm00001d000175_P001 | Maize | plastid | 70.83 | 68.51 |
| Zm00001d029886_P001 | Maize | vacuole | 68.75 | 66.67 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 52.08 | 59.7 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 62.76 | 59.07 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 55.99 | 57.95 |
| GSMUA_Achr11P... | Banana | nucleus | 55.47 | 53.79 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 52.34 | 52.21 |
| AT4G17350.1 | Thale cress | cytosol | 44.53 | 42.22 |
| CDY09634 | Canola | nucleus | 44.79 | 42.05 |
| PGSC0003DMT400012161 | Potato | nucleus | 42.45 | 41.79 |
| CDY65120 | Canola | cytosol | 43.49 | 41.44 |
| Bra026246.1-P | Field mustard | nucleus | 43.23 | 41.19 |
| Solyc08g078500.2.1 | Tomato | cytosol | 41.67 | 41.03 |
| CDY64500 | Canola | cytosol | 42.71 | 40.69 |
| KRH28119 | Soybean | nucleus | 40.89 | 40.15 |
| KRH04152 | Soybean | nucleus | 40.62 | 39.69 |
| KRH57434 | Soybean | nucleus | 40.1 | 39.09 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 39.32 | 38.62 |
| AT5G47440.1 | Thale cress | nucleus | 40.62 | 38.42 |
| Bra024944.1-P | Field mustard | cytosol | 40.1 | 38.02 |
| CDX77767 | Canola | nucleus | 39.84 | 37.68 |
| CDY59298 | Canola | nucleus | 39.58 | 37.44 |
| CDY40515 | Canola | cytosol | 39.84 | 34.85 |
| CDY32269 | Canola | cytosol | 34.11 | 34.66 |
| Bra038497.1-P | Field mustard | nucleus | 38.8 | 34.57 |
| AT4G16670.1 | Thale cress | cytosol | 38.28 | 34.27 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 36.98 | 30.94 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 37.24 | 30.36 |
| TraesCS3A01G155500.1 | Wheat | cytosol | 33.59 | 29.86 |
| TraesCS2A01G355900.2 | Wheat | cytosol | 26.04 | 23.75 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G220700.1 | EnsemblPlantsGene:TraesCS1A01G220700 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF5 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | SUPFAM:SSF50729 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1A:-:389819742..389821405
Molecular Weight (calculated)
41300.3 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.249
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEMGWKAG SAFRFDVVEE EDAAAAAIPP PQTPLEPMEY LSRSWSVSAS EISKILVGGK KSSFNRLPLQ EMGIPEASAV LAATAIVPCY RHHADARRSS
101: ISATGHHQSI GKWFQHKDAS RSRQSSKEKL RADRAHVHAM VSVVRVTAAV AAVAAASTSS DTQASKMAAA MAPATELLAS HCVEAARLAG ATHEQVASAV
201: QSAVGVRSAG DLTTLTAAAA TALRGAATMK QRVQREAARS NASVLPYEKG HSWSPDVWCK EGELLKRTRK GDLHRTKVSV YINRKSQVML KLKSKHIGGA
301: LSKNNKSVVY GVYSELPTWV IEPGKAFMDE KCCFGLSTAQ GIVEFECQDG TSKQNWVDDV QNLLRQVAAD DRVGDKLESV VKMG
101: ISATGHHQSI GKWFQHKDAS RSRQSSKEKL RADRAHVHAM VSVVRVTAAV AAVAAASTSS DTQASKMAAA MAPATELLAS HCVEAARLAG ATHEQVASAV
201: QSAVGVRSAG DLTTLTAAAA TALRGAATMK QRVQREAARS NASVLPYEKG HSWSPDVWCK EGELLKRTRK GDLHRTKVSV YINRKSQVML KLKSKHIGGA
301: LSKNNKSVVY GVYSELPTWV IEPGKAFMDE KCCFGLSTAQ GIVEFECQDG TSKQNWVDDV QNLLRQVAAD DRVGDKLESV VKMG
001: MQQFCRSNNN FNSQYRSTGT TPGPITATTT QSKTVGRWLK DRREKKKEEM RAHNAQIHAA VSVAGVAAAV AAIAAATAAS SSAGKDENMA KTDMAVASAA
101: TLVAAQCVEA AEVMGAERDH LASVVSSAVN VRSAGDIMTL TAGAATALRG VATLKARAMK EVWHIASVIP MDKGINLGGC SNVNGNGSYV SSSSSHSGEF
201: LVEDNFLGHC NREWLARGGQ LLKRTRKGDL HWKIVSVYIN RLNQVILKMK SRHVGGTFTK KNKNVVIDVI KNVQAWPGRH LLEGGEDLRY FGLKTVPRGI
301: VEFQCKSQRE YEMWTQGVSR LIAVAAERNN RYRI
101: TLVAAQCVEA AEVMGAERDH LASVVSSAVN VRSAGDIMTL TAGAATALRG VATLKARAMK EVWHIASVIP MDKGINLGGC SNVNGNGSYV SSSSSHSGEF
201: LVEDNFLGHC NREWLARGGQ LLKRTRKGDL HWKIVSVYIN RLNQVILKMK SRHVGGTFTK KNKNVVIDVI KNVQAWPGRH LLEGGEDLRY FGLKTVPRGI
301: VEFQCKSQRE YEMWTQGVSR LIAVAAERNN RYRI
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.