Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40515 | Canola | cytosol | 82.75 | 80.87 |
| Bra038497.1-P | Field mustard | nucleus | 80.89 | 80.51 |
| CDY32269 | Canola | cytosol | 67.13 | 76.19 |
| AT4G17350.1 | Thale cress | cytosol | 47.32 | 50.12 |
| AT5G47440.1 | Thale cress | nucleus | 42.66 | 45.07 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 34.27 | 43.88 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 37.53 | 41.71 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 37.3 | 41.56 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 37.53 | 41.28 |
| GSMUA_Achr11P... | Banana | nucleus | 38.0 | 41.16 |
| Os10t0560000-01 | Rice | cytosol | 35.9 | 40.63 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 36.36 | 40.0 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 36.36 | 40.0 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 36.36 | 39.1 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 34.27 | 38.28 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 35.2 | 38.13 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 34.03 | 38.02 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 33.8 | 37.86 |
| Zm00001d000175_P001 | Maize | plastid | 34.97 | 37.78 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 32.63 | 37.74 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 36.13 | 37.71 |
| KXG31087 | Sorghum | nucleus | 37.53 | 37.7 |
| Zm00001d051361_P001 | Maize | plastid | 37.06 | 37.06 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 35.2 | 37.01 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 32.87 | 36.62 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 34.27 | 36.57 |
| Zm00001d029886_P001 | Maize | vacuole | 33.57 | 36.36 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 34.27 | 35.42 |
| AT3G22810.1 | Thale cress | cytosol | 30.07 | 27.33 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 29.84 | 26.95 |
| AT4G32780.2 | Thale cress | cytosol | 26.57 | 26.76 |
| AT5G43870.1 | Thale cress | plastid | 27.51 | 26.05 |
| AT3G63300.1 | Thale cress | plastid | 28.9 | 24.9 |
| AT5G57770.1 | Thale cress | cytosol | 20.98 | 22.17 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827369 | ProteinID:AEE83782.1 | ArrayExpress:AT4G16670 | EnsemblPlantsGene:AT4G16670 | RefSeq:AT4G16670 |
| TAIR:AT4G16670 | RefSeq:AT4G16670-TAIR-G | EnsemblPlants:AT4G16670.1 | TAIR:AT4G16670.1 | Unigene:At.33060 | EMBL:BT020493 |
| EMBL:BT026515 | InterPro:DUF828 | RefSeq:NP_193400.2 | PFAM:PF05703 | PFAM:PF08458 | InterPro:PH_pln |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31351 |
| PANTHER:PTHR31351:SF2 | UniProt:Q5HZ31 | SUPFAM:SSF50729 | UniParc:UPI000034F0A3 | SEG:seg | : |
Description
At4g16670 [Source:UniProtKB/TrEMBL;Acc:Q5HZ31]
Coordinates
chr4:+:9385180..9387754
Molecular Weight (calculated)
46312.8 Da
IEP (calculated)
6.736
GRAVY (calculated)
-0.362
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYDRTLNLI PYGLQGVREE EEIEEDDEES MTLSSVPENE TSECSSPPAT YPPIPPRPKT PREPMEFLCR SWSLSTSEIS LALSSQKSDK QLNKNPNISQ
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.