Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G027000.1 | Barley | cytosol | 100.0 | 100.0 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 98.97 | 96.74 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 94.36 | 95.58 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 93.59 | 94.56 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 94.36 | 94.36 |
| KXG31087 | Sorghum | nucleus | 74.36 | 67.92 |
| Zm00001d051361_P001 | Maize | plastid | 73.33 | 66.67 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 52.05 | 53.0 |
| KRH28119 | Soybean | nucleus | 44.1 | 43.99 |
| CDY64500 | Canola | cytosol | 45.38 | 43.92 |
| CDY65120 | Canola | cytosol | 44.87 | 43.42 |
| KRH04152 | Soybean | nucleus | 43.59 | 43.26 |
| Bra026246.1-P | Field mustard | nucleus | 44.62 | 43.18 |
| Solyc08g078500.2.1 | Tomato | cytosol | 43.08 | 43.08 |
| PGSC0003DMT400012161 | Potato | nucleus | 43.08 | 43.08 |
| AT4G17350.1 | Thale cress | cytosol | 44.62 | 42.96 |
| CDY09634 | Canola | nucleus | 44.87 | 42.79 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 42.82 | 42.71 |
| KRH57434 | Soybean | nucleus | 42.82 | 42.39 |
| AT5G47440.1 | Thale cress | nucleus | 42.31 | 40.64 |
| CDX77767 | Canola | nucleus | 41.79 | 40.15 |
| Bra024944.1-P | Field mustard | cytosol | 41.28 | 39.75 |
| CDY59298 | Canola | nucleus | 41.28 | 39.66 |
| Bra038497.1-P | Field mustard | nucleus | 40.26 | 36.43 |
| AT4G16670.1 | Thale cress | cytosol | 40.0 | 36.36 |
| CDY40515 | Canola | cytosol | 40.51 | 35.99 |
| CDY32269 | Canola | cytosol | 34.87 | 35.98 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 38.21 | 32.11 |
| HORVU3Hr1G031590.6 | Barley | cytosol, nucleus, plastid | 32.56 | 18.65 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G032140.1 | EnsemblPlantsGene:HORVU0Hr1G032140 | InterPro:DUF828 | InterPro:IPR001849 | InterPro:PH_domain | InterPro:PH_pln |
| PANTHER:PTHR31351 | PANTHER:PTHR31351:SF2 | PFAM:PF05703 | PFAM:PF08458 | PFscan:PS50003 | SEG:seg |
| SMART:SM00233 | UniParc:UPI000B46627B | UniProt:A0A287EAP7 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchrUn:+:191457591..191458938
Molecular Weight (calculated)
41731.8 Da
IEP (calculated)
10.495
GRAVY (calculated)
-0.319
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYLLGRTK RRDHLLLMDS AGGAVQPPQT PVEPMEFLSR SWSVSASDLS KVLAVGGGRR SSNFVVDRLS GMLMPETLAL AAASGTNSPK KRVRLQPCRS
101: RSAISGHHHA IGRWFHHKDG GSRVDKARAE RARVHAAVSV ASVAAAVAAL ASGAANPEDA EDAKMDAALA SATQLLASHC IEFAELAGAD HDQVASAVEG
201: AVDVRSPGDL MTLTAAAATA LRGATALRQR EQREARSKAA VAPFEKAGSC GTDIWCKEGT LLKRSRKGAL RWKRVSVYIN KRSQVIVKLK SKHIGGAFSK
301: KKRSVVYGVH DDMPAWPPGH ESCGMPDSSA AAPEKRHFGL RTAQGLVEFE CESRVHKQEW VESVKNLLRQ AAGGTAQLEH SFQSLRLSAS
101: RSAISGHHHA IGRWFHHKDG GSRVDKARAE RARVHAAVSV ASVAAAVAAL ASGAANPEDA EDAKMDAALA SATQLLASHC IEFAELAGAD HDQVASAVEG
201: AVDVRSPGDL MTLTAAAATA LRGATALRQR EQREARSKAA VAPFEKAGSC GTDIWCKEGT LLKRSRKGAL RWKRVSVYIN KRSQVIVKLK SKHIGGAFSK
301: KKRSVVYGVH DDMPAWPPGH ESCGMPDSSA AAPEKRHFGL RTAQGLVEFE CESRVHKQEW VESVKNLLRQ AAGGTAQLEH SFQSLRLSAS
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.