Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012161 | Potato | nucleus | 97.18 | 97.18 |
| KRH04152 | Soybean | nucleus | 56.67 | 56.23 |
| KRH57434 | Soybean | nucleus | 55.38 | 54.82 |
| KRH28119 | Soybean | nucleus | 54.87 | 54.73 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 53.59 | 53.45 |
| AT4G17350.1 | Thale cress | cytosol | 54.36 | 52.35 |
| CDY64500 | Canola | cytosol | 53.08 | 51.36 |
| Bra026246.1-P | Field mustard | nucleus | 52.82 | 51.12 |
| CDY65120 | Canola | cytosol | 52.56 | 50.87 |
| CDY09634 | Canola | nucleus | 53.33 | 50.86 |
| AT5G47440.1 | Thale cress | nucleus | 51.28 | 49.26 |
| CDY59298 | Canola | nucleus | 50.26 | 48.28 |
| Bra024944.1-P | Field mustard | cytosol | 50.0 | 48.15 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 41.28 | 48.06 |
| CDX77767 | Canola | nucleus | 49.23 | 47.29 |
| GSMUA_Achr11P... | Banana | nucleus | 45.38 | 44.7 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 42.56 | 43.12 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 43.08 | 43.08 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 43.08 | 43.08 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 42.56 | 43.01 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 42.56 | 42.56 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 41.54 | 42.3 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 43.08 | 42.11 |
| Os10t0560000-01 | Rice | cytosol | 40.51 | 41.69 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 41.03 | 41.67 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.51 | 41.15 |
| Zm00001d000175_P001 | Maize | plastid | 41.79 | 41.06 |
| Zm00001d029886_P001 | Maize | vacuole | 41.03 | 40.4 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 42.56 | 40.39 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 39.49 | 40.0 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 40.51 | 39.9 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 36.92 | 38.81 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 39.74 | 38.56 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 40.26 | 38.48 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.51 | 38.07 |
| Zm00001d051361_P001 | Maize | plastid | 40.51 | 36.83 |
| KXG31087 | Sorghum | nucleus | 40.0 | 36.53 |
| Solyc08g066860.2.1 | Tomato | nucleus | 37.95 | 35.66 |
| Solyc09g082580.2.1 | Tomato | cytosol | 36.41 | 30.54 |
| Solyc09g065590.2.1 | Tomato | plastid | 33.08 | 26.49 |
| Solyc07g006320.2.1 | Tomato | cytosol | 24.87 | 24.87 |
Protein Annotations
| EnsemblPlants:Solyc08g078500.2.1 | EnsemblPlantsGene:Solyc08g078500.2 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF2 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | UniParc:UPI000276ACD1 | UniProt:K4CNK9 | MapMan:35.1 |
Description
No Description!
Coordinates
chr8:-:62278975..62282662
Molecular Weight (calculated)
43300.4 Da
IEP (calculated)
8.234
GRAVY (calculated)
-0.508
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MEENYLLGWK KNNDSDNWLM SVEEDEEMDV ELPSVHQPQT PMEPMDFLSR SWSLSASELS KALAKNQKHY SFERKFSVIN ESLSPPPQLP ETKMLNSQNG
101: RKAGGIGRWF HHKDSNNNSV KKKEKARLEN AHMHTVLSIA GLAAALAAAA AAENSNGSSS KMSTALASAT ELLASHCLEM AESAGADHDR VASVVRSAVD
201: IHSASDLVTL TAAAATALRG EAALKSRLPK EAKRNASISP CDRSMVEAQS FAAVFPNDMD EHDSPFAGEL LHLTRKGMQR WKRVSVYINK KSQVVIKLKS
301: KHVGGAFSKN NKCVVYEVCD ESEPWLFNKE IESLDLYLRV KTAQGLLEFK CKSKSHKQKW IDGIQKLLDK TSLYEDTEGS MTMLRINKSF
101: RKAGGIGRWF HHKDSNNNSV KKKEKARLEN AHMHTVLSIA GLAAALAAAA AAENSNGSSS KMSTALASAT ELLASHCLEM AESAGADHDR VASVVRSAVD
201: IHSASDLVTL TAAAATALRG EAALKSRLPK EAKRNASISP CDRSMVEAQS FAAVFPNDMD EHDSPFAGEL LHLTRKGMQR WKRVSVYINK KSQVVIKLKS
301: KHVGGAFSKN NKCVVYEVCD ESEPWLFNKE IESLDLYLRV KTAQGLLEFK CKSKSHKQKW IDGIQKLLDK TSLYEDTEGS MTMLRINKSF
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.