Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024944.1-P | Field mustard | cytosol | 81.28 | 81.48 |
| CDX77767 | Canola | nucleus | 81.03 | 81.03 |
| CDY59298 | Canola | nucleus | 80.79 | 80.79 |
| AT4G17350.1 | Thale cress | cytosol | 78.33 | 78.52 |
| KRH04152 | Soybean | nucleus | 51.48 | 53.18 |
| KRH28119 | Soybean | nucleus | 50.74 | 52.69 |
| PGSC0003DMT400012161 | Potato | nucleus | 50.0 | 52.05 |
| KRH57434 | Soybean | nucleus | 50.0 | 51.52 |
| Solyc08g078500.2.1 | Tomato | cytosol | 49.26 | 51.28 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 48.77 | 50.64 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 37.68 | 45.67 |
| GSMUA_Achr11P... | Banana | nucleus | 44.09 | 45.2 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 40.89 | 43.12 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 40.64 | 42.75 |
| Os10t0560000-01 | Rice | cytosol | 39.9 | 42.74 |
| AT4G16670.1 | Thale cress | cytosol | 45.07 | 42.66 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 40.64 | 42.31 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 40.64 | 42.31 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 40.15 | 41.79 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 40.64 | 41.35 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 38.42 | 40.62 |
| Zm00001d000175_P001 | Maize | plastid | 39.41 | 40.3 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 37.93 | 40.21 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 37.68 | 39.84 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 39.66 | 39.17 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 38.18 | 39.14 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 36.7 | 38.7 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 38.18 | 38.56 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 35.22 | 38.54 |
| Zm00001d029886_P001 | Maize | vacuole | 37.44 | 38.38 |
| KXG31087 | Sorghum | nucleus | 40.15 | 38.17 |
| Zm00001d051361_P001 | Maize | plastid | 39.66 | 37.53 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 37.68 | 37.5 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 38.18 | 37.35 |
| AT5G43870.1 | Thale cress | plastid | 31.77 | 28.48 |
| AT3G22810.1 | Thale cress | cytosol | 33.0 | 28.39 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 32.51 | 27.79 |
| AT4G32780.2 | Thale cress | cytosol | 29.06 | 27.7 |
| AT3G63300.1 | Thale cress | plastid | 32.27 | 26.31 |
| AT5G57770.1 | Thale cress | cytosol | 22.66 | 22.66 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834792 | ProteinID:AED95513.1 | ArrayExpress:AT5G47440 | EnsemblPlantsGene:AT5G47440 | RefSeq:AT5G47440 |
| TAIR:AT5G47440 | RefSeq:AT5G47440-TAIR-G | EnsemblPlants:AT5G47440.1 | TAIR:AT5G47440.1 | ProteinID:BAB09069.1 | EMBL:BT015940 |
| EMBL:BT020444 | InterPro:DUF828 | InterPro:IPR001849 | RefSeq:NP_199555.1 | PFAM:PF05703 | PFAM:PF08458 |
| InterPro:PH_domain | InterPro:PH_pln | PO:PO:0000293 | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF2 | UniProt:Q9FGL4 |
| SMART:SM00233 | UniParc:UPI000009FD69 | SEG:seg | : | : | : |
Description
At5g47440 [Source:UniProtKB/TrEMBL;Acc:Q9FGL4]
Coordinates
chr5:-:19243531..19245648
Molecular Weight (calculated)
44936.5 Da
IEP (calculated)
8.991
GRAVY (calculated)
-0.495
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGFYSDWN DSSSSLFGSE NPEHELEEGN VRSEEIVSQI PQPQTPREPM KFLSRSWSLS ASEISKALAQ KQRQQRDLFS VSQNSPRGFF QDVAADPLMA
101: ENIMNSAGTR RSGRLSKWFH HKQHTNPSTM RIPRKKDKAR VQKAHVHSAV SIAALAAGLA SVTSEESCSK ESCSMMALAL ASATELLASH CIDMAEQAGA
201: DHTCVASTVR SSVDIHSPGD LMTLTAAAAT ALRGEAALKV RQPKESRKNA TITPCERSFS DSHWPGENCQ FRLEEPNLPL EGELVQCARN GLQRNKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEISAWP CRKERENSEE VYFGLKTGQG LLEFKCKSKI QKQRWVAGIQ SNLRLVSCLE AAKCSLESLS
401: LSNRMR
101: ENIMNSAGTR RSGRLSKWFH HKQHTNPSTM RIPRKKDKAR VQKAHVHSAV SIAALAAGLA SVTSEESCSK ESCSMMALAL ASATELLASH CIDMAEQAGA
201: DHTCVASTVR SSVDIHSPGD LMTLTAAAAT ALRGEAALKV RQPKESRKNA TITPCERSFS DSHWPGENCQ FRLEEPNLPL EGELVQCARN GLQRNKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEISAWP CRKERENSEE VYFGLKTGQG LLEFKCKSKI QKQRWVAGIQ SNLRLVSCLE AAKCSLESLS
401: LSNRMR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.