Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 79.1 | 66.92 |
| Os10t0560000-01 | Rice | cytosol | 64.18 | 56.73 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 60.0 | 52.34 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 59.7 | 52.08 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 58.51 | 50.91 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 57.91 | 50.65 |
| Zm00001d000175_P001 | Maize | plastid | 59.4 | 50.13 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 59.1 | 50.0 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 54.93 | 49.6 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 60.6 | 49.39 |
| Zm00001d029886_P001 | Maize | vacuole | 57.91 | 48.99 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 59.1 | 48.53 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 58.21 | 48.51 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 59.1 | 47.71 |
| KRH28119 | Soybean | nucleus | 50.15 | 42.97 |
| KRH04152 | Soybean | nucleus | 49.55 | 42.24 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 48.96 | 41.94 |
| KRH57434 | Soybean | nucleus | 49.25 | 41.88 |
| PGSC0003DMT400012161 | Potato | nucleus | 48.36 | 41.54 |
| Solyc08g078500.2.1 | Tomato | cytosol | 48.06 | 41.28 |
| CDY65120 | Canola | cytosol | 49.25 | 40.94 |
| CDY64500 | Canola | cytosol | 48.96 | 40.69 |
| Bra026246.1-P | Field mustard | nucleus | 48.96 | 40.69 |
| CDY09634 | Canola | nucleus | 49.55 | 40.59 |
| AT4G17350.1 | Thale cress | cytosol | 48.66 | 40.25 |
| Bra024944.1-P | Field mustard | cytosol | 45.67 | 37.78 |
| AT5G47440.1 | Thale cress | nucleus | 45.67 | 37.68 |
| CDY59298 | Canola | nucleus | 45.37 | 37.44 |
| CDX77767 | Canola | nucleus | 45.37 | 37.44 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 10.45 | 36.08 |
| AT4G16670.1 | Thale cress | cytosol | 43.88 | 34.27 |
| CDY40515 | Canola | cytosol | 43.88 | 33.49 |
| GSMUA_Achr10P... | Banana | nucleus | 40.0 | 33.33 |
| CDY32269 | Canola | cytosol | 37.61 | 33.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.48 | 32.82 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 43.88 | 32.38 |
| Bra038497.1-P | Field mustard | nucleus | 41.49 | 32.25 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 42.69 | 32.13 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 33.73 | 30.79 |
| GSMUA_Achr10P... | Banana | cytosol | 25.67 | 22.28 |
| GSMUA_Achr4P02070_001 | Banana | cytosol | 25.07 | 21.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P11040_001 | EnsemblPlants:GSMUA_Achr8T11040_001 | EnsemblPlantsGene:GSMUA_Achr8G11040_001 | Gene3D:2.30.29.30 | InterPro:DUF828 | InterPro:IPR001849 |
| InterPro:IPR011993 | InterPro:PH-like_dom_sf | InterPro:PH_domain | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF5 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | SMART:SM00233 | SUPFAM:SSF50729 | UniParc:UPI000296A66F |
| UniProt:M0TPF7 | MapMan:35.1 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G11040_001]
Coordinates
chr8:-:7917335..7918936
Molecular Weight (calculated)
36218.6 Da
IEP (calculated)
10.217
GRAVY (calculated)
-0.229
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLSRSWSV SASEISKALL AGNKKRNFVV DRLPEMMIPE TLVIAAAAAA PPQSTHKRPR SGINPAAIGK WFHHQEANRT KAKCKERARA EKARIHALVS
101: VAGVAAAVAA VAAASNSGDQ TSKMSAAMAS ATEILASHCV EIAEQTGVDH EHVAAAIRSA VDFKTAGDLM TLTAAAATAL RGAAALKSRL QREARNNAAV
201: IPYEKSQCCS PDIWCKEGEL LKRTGKGTLH WKRVSIYVNR KSQVIVKLKS KHIGGALSKK KKSVVYGVYD DVAAWPERAG ERCCFGLRTA QGSIEFECEN
301: STTKLRWVDG VQNLLKQVSG DAEHVEHAME LLKLR
101: VAGVAAAVAA VAAASNSGDQ TSKMSAAMAS ATEILASHCV EIAEQTGVDH EHVAAAIRSA VDFKTAGDLM TLTAAAATAL RGAAALKSRL QREARNNAAV
201: IPYEKSQCCS PDIWCKEGEL LKRTGKGTLH WKRVSIYVNR KSQVIVKLKS KHIGGALSKK KKSVVYGVYD DVAAWPERAG ERCCFGLRTA QGSIEFECEN
301: STTKLRWVDG VQNLLKQVSG DAEHVEHAME LLKLR
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.