Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G220700.1 | Wheat | cytosol | 94.29 | 94.53 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 93.51 | 93.75 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 88.05 | 88.51 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 94.03 | 87.23 |
| Os10t0560000-01 | Rice | cytosol | 74.03 | 75.2 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 72.73 | 68.13 |
| Zm00001d000175_P001 | Maize | plastid | 69.35 | 67.25 |
| Zm00001d029886_P001 | Maize | vacuole | 68.31 | 66.41 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 50.91 | 58.51 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 61.82 | 58.33 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 54.55 | 56.6 |
| GSMUA_Achr11P... | Banana | nucleus | 53.77 | 52.27 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 50.65 | 50.65 |
| CDY09634 | Canola | nucleus | 43.38 | 40.83 |
| AT4G17350.1 | Thale cress | cytosol | 42.6 | 40.49 |
| PGSC0003DMT400012161 | Potato | nucleus | 40.78 | 40.26 |
| CDY65120 | Canola | cytosol | 41.56 | 39.7 |
| Solyc08g078500.2.1 | Tomato | cytosol | 40.0 | 39.49 |
| Bra026246.1-P | Field mustard | nucleus | 41.3 | 39.45 |
| CDY64500 | Canola | cytosol | 40.78 | 38.96 |
| KRH28119 | Soybean | nucleus | 39.48 | 38.87 |
| KRH04152 | Soybean | nucleus | 39.48 | 38.68 |
| KRH57434 | Soybean | nucleus | 38.96 | 38.07 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 38.18 | 37.6 |
| AT5G47440.1 | Thale cress | nucleus | 38.7 | 36.7 |
| Bra024944.1-P | Field mustard | cytosol | 38.18 | 36.3 |
| CDX77767 | Canola | nucleus | 37.92 | 35.96 |
| CDY59298 | Canola | nucleus | 37.66 | 35.71 |
| CDY40515 | Canola | cytosol | 38.44 | 33.71 |
| CDY32269 | Canola | cytosol | 32.99 | 33.6 |
| Bra038497.1-P | Field mustard | nucleus | 37.4 | 33.41 |
| AT4G16670.1 | Thale cress | cytosol | 36.62 | 32.87 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 35.58 | 29.85 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 35.84 | 29.3 |
| TraesCS3A01G155500.1 | Wheat | cytosol | 31.95 | 28.47 |
| TraesCS2A01G355900.2 | Wheat | cytosol | 24.94 | 22.8 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G147100.2 | EnsemblPlantsGene:TraesCS3A01G147100 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF5 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | SUPFAM:SSF50729 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3A:+:128564659..128566427
Molecular Weight (calculated)
41342.3 Da
IEP (calculated)
9.539
GRAVY (calculated)
-0.287
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEMGWKAG SAFRFDVVDE EEDAAAAAIP PPQTPLEPME YLSRSWSVSA SEISKILVGG KKSCLNRLPL QEMGIPEASA VLAATAIVPS YRHHTEARRS
101: SISGIGHHQS IGKWFQHKDA SRSRQSSKEK LRADRAHVHA MVSVVRVAAA VAAVAAASTS SDTQAPKMAA AMAPATELLA SHCVEAARLA GPTHEQVASA
201: VQSAVGVRSA GDLTTLTAGA ATALPGTATM KQRVQREAAR SNASVLPYEK GHSWSPDVWC KEGELLKRTR KGDLHRTKVS VYINRRSQGM LKLKSKHIGG
301: ALSKNNKSVV YGVYSELPTS VIEPGKAFMD EKCCFGLSTA QGIVEFECQD STSKQNWVDD VQNLLRQVAP DDRVGNKLES LVKMG
101: SISGIGHHQS IGKWFQHKDA SRSRQSSKEK LRADRAHVHA MVSVVRVAAA VAAVAAASTS SDTQAPKMAA AMAPATELLA SHCVEAARLA GPTHEQVASA
201: VQSAVGVRSA GDLTTLTAGA ATALPGTATM KQRVQREAAR SNASVLPYEK GHSWSPDVWC KEGELLKRTR KGDLHRTKVS VYINRRSQGM LKLKSKHIGG
301: ALSKNNKSVV YGVYSELPTS VIEPGKAFMD EKCCFGLSTA QGIVEFECQD STSKQNWVDD VQNLLRQVAP DDRVGNKLES LVKMG
001: MEYDRTLNLI PYGLQGVREE EEIEEDDEES MTLSSVPENE TSECSSPPAT YPPIPPRPKT PREPMEFLCR SWSLSTSEIS LALSSQKSDK QLNKNPNISQ
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST
Arabidopsis Description
At4g16670 [Source:UniProtKB/TrEMBL;Acc:Q5HZ31]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.