Factsheet for TraesCS5A01G377600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G293000.1
TraesCS5B01G292200.1
TraesCS5D01G300300.2
TraesCS7A01G263800.2
TraesCS7B01G161800.1
TraesCS7D01G264700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63300.1	TraesCS5A01G293000.1	AT5G13300.1	19363154
AT3G63300.1	TraesCS5B01G292200.1	AT5G13300.1	19363154
AT3G63300.1	TraesCS5D01G300300.2	AT5G13300.1	19363154
AT3G63300.1	TraesCS7A01G263800.2	AT5G13300.1	19363154
AT3G63300.1	TraesCS7B01G161800.1	AT5G13300.1	19363154
AT3G63300.1	TraesCS7D01G264700.1	AT5G13300.1	19363154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G387600.1	Wheat	nucleus	99.13	98.27
TraesCS5B01G381200.1	Wheat	nucleus	99.13	98.06
HORVU5Hr1G093460.2	Barley	nucleus	97.6	96.55
KXG37970	Sorghum	cytosol	86.93	84.71
Zm00001d033283_P001	Maize	cytosol	86.27	83.9
Os03t0635800-01	Rice	nucleus	68.85	83.6
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	82.57	80.81
TraesCS5A01G056700.2	Wheat	nucleus	74.95	73.04
GSMUA_Achr5P02990_001	Banana	nucleus	70.59	71.37
GSMUA_AchrUn_...	Banana	nucleus	69.72	70.48
GSMUA_Achr7P07730_001	Banana	nucleus	67.32	69.44
GSMUA_Achr4P21170_001	Banana	cytosol	55.34	69.21
Os12t0604200-00	Rice	nucleus	52.51	64.96
VIT_05s0020g04020.t01	Wine grape	nucleus	64.92	64.64
KRG91356	Soybean	cytosol	66.01	63.66
KRH35470	Soybean	nucleus	65.36	63.03
KRH67258	Soybean	nucleus	52.07	62.57
Solyc09g082580.2.1	Tomato	cytosol	62.75	61.94
GSMUA_Achr4P21160_001	Banana	cytosol	13.07	61.86
PGSC0003DMT400016521	Potato	nucleus	62.75	61.8
KRH69115	Soybean	nucleus	64.27	60.7
Bra033702.1-P	Field mustard	cytosol, plastid	55.99	60.47
KRH31661	Soybean	nucleus	63.62	60.46
Bra036892.1-P	Field mustard	nucleus	61.44	60.26
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	60.78	60.0
CDY36869	Canola	nucleus, plastid	22.66	59.77
Bra039719.1-P	Field mustard	nucleus	60.35	59.57
AT4G14740.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	61.22	59.16
CDY16256	Canola	cytosol	51.42	59.0
CDY29764	Canola	nucleus	56.86	58.92
CDX94730	Canola	cytosol	57.52	58.8
CDY22328	Canola	plastid	57.73	58.76
AT5G43870.1	Thale cress	plastid	57.73	58.5
AT3G22810.1	Thale cress	cytosol	60.13	58.47
VIT_07s0151g00290.t01	Wine grape	nucleus	60.78	58.37
CDY14898	Canola	cytosol	57.08	58.09
Bra036001.1-P	Field mustard	nucleus	56.86	57.87
KRH32056	Soybean	nucleus	58.39	55.72
PGSC0003DMT400049811	Potato	plastid	58.61	55.69
CDX93914	Canola	nucleus	59.48	55.6
Bra040444.1-P	Field mustard	plastid	58.82	55.56
KRG95576	Soybean	nucleus	58.61	55.46
Solyc09g065590.2.1	Tomato	plastid	58.82	55.44
CDY53717	Canola	nucleus	59.04	55.19
KRH71381	Soybean	nucleus	57.73	55.09
Bra023803.1-P	Field mustard	cytosol	54.9	54.78
AT3G63300.1	Thale cress	plastid	59.26	54.62
CDX96925	Canola	plastid	56.86	53.27
CDY46598	Canola	mitochondrion	55.12	52.38
CDY36868	Canola	nucleus	26.14	52.17
TraesCS6A01G250400.1	Wheat	cytosol	32.46	38.7
TraesCS1A01G220700.1	Wheat	cytosol	30.94	36.98
TraesCS3A01G155500.1	Wheat	cytosol	33.99	36.11
TraesCS3A01G147100.2	Wheat	cytosol, endoplasmic reticulum, nucleus	29.85	35.58
TraesCS5A01G540500.1	Wheat	cytosol	27.45	33.96
TraesCS5A01G540300.1	Wheat	extracellular	29.41	33.09
TraesCS2A01G355900.2	Wheat	cytosol	25.27	27.55

Protein Annotations

EnsemblPlants:TraesCS5A01G377600.1	EnsemblPlantsGene:TraesCS5A01G377600	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF4
PFAM:PF05703	PFAM:PF08458	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5A:+:575323152..575328643

Molecular Weight (calculated)

48745.0 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.299

Length

459 amino acids

Sequence
(BLAST)

001: MGDHHHPRAR PAAGDLRPPE PPLDPLEFLS RSWSASAVDV PRPRPPSPAP LLAAPIAEDP ACCELDDGAA TAGSSFSFAS AATSQFIMER ILAQSEVAPL
101: TTGRLSHSSG PLNGGGSLTD SPPVSPEIDD SQYCRAGTPK PQAYRGGSKT VGRWLKDRKE KKKEETRAHN AQVHAAVSVA AVAAAVAAVA AATAAASSTG
201: KDDRAARTDM AMASAATLVA AQCVEAAESL GAEREHLEAV VSSAVNVRTP GDIVTVTAAA ATALRGAATL RARALKEVWN IAAVIPVEKG TMGGGGAGGG
301: HHHKQIVQKQ QHRKLESNGS SISDLSLEEE NNFLGVCSQE LLVRGTELLK RTRKGALHWK VVSVYINRMG LVSLKMKSRH VAGTITKKKK GVVIDVCKDV
401: AAWPGRHLLE DGEHRRYFGL RTADHRVIEF ECTSQREYEL WTKGVARLLS IAGERKRPL

Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)

001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.