Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr4P00060_001 | |
| GSMUA_Achr7P22530_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | GSMUA_Achr11P... | AT5G13300.1 | 19363154 |
| AT3G63300.1 | GSMUA_Achr4P00060_001 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | GSMUA_Achr7P22530_001 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P21170_001 | Banana | cytosol | 69.38 | 85.83 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 79.96 | 81.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 81.5 | 81.5 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 16.52 | 77.32 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 71.37 | 70.59 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 71.81 | 70.26 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 71.81 | 70.26 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 71.59 | 70.19 |
| KXG37970 | Sorghum | cytosol | 72.69 | 70.06 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 71.15 | 68.87 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 69.82 | 68.76 |
| Zm00001d033283_P001 | Maize | cytosol | 71.15 | 68.43 |
| Os03t0635800-01 | Rice | nucleus | 56.17 | 67.46 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 69.6 | 67.09 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 69.16 | 66.95 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 69.16 | 66.81 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 71.81 | 66.8 |
| KRG91356 | Soybean | cytosol | 69.82 | 66.6 |
| PGSC0003DMT400016521 | Potato | nucleus | 68.28 | 66.52 |
| Solyc09g082580.2.1 | Tomato | cytosol | 68.06 | 66.45 |
| KRH35470 | Soybean | nucleus | 68.94 | 65.76 |
| KRH67258 | Soybean | nucleus | 55.07 | 65.44 |
| Zm00001d030661_P001 | Maize | cytosol | 65.86 | 64.72 |
| KRH31661 | Soybean | nucleus | 68.72 | 64.6 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 67.62 | 64.23 |
| KRH69115 | Soybean | nucleus | 68.72 | 64.2 |
| Bra036892.1-P | Field mustard | nucleus | 65.2 | 63.25 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.54 | 63.01 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 58.81 | 62.82 |
| CDY16256 | Canola | cytosol | 55.29 | 62.75 |
| Bra039719.1-P | Field mustard | nucleus | 64.1 | 62.58 |
| AT5G43870.1 | Thale cress | plastid | 62.11 | 62.25 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 64.76 | 61.89 |
| CDY29764 | Canola | nucleus | 60.35 | 61.85 |
| Os12t0604200-00 | Rice | nucleus | 50.44 | 61.73 |
| CDX94730 | Canola | cytosol | 60.57 | 61.25 |
| CDY36869 | Canola | nucleus, plastid | 23.35 | 60.92 |
| KRG95576 | Soybean | nucleus | 64.98 | 60.82 |
| CDY14898 | Canola | cytosol | 60.35 | 60.75 |
| Bra036001.1-P | Field mustard | nucleus | 60.13 | 60.53 |
| CDY22328 | Canola | plastid | 60.13 | 60.53 |
| AT3G22810.1 | Thale cress | cytosol | 62.56 | 60.17 |
| KRH32056 | Soybean | nucleus | 63.66 | 60.08 |
| KRH71381 | Soybean | nucleus | 63.44 | 59.88 |
| PGSC0003DMT400049811 | Potato | plastid | 63.22 | 59.42 |
| Bra023803.1-P | Field mustard | cytosol | 59.91 | 59.13 |
| Solyc09g065590.2.1 | Tomato | plastid | 63.22 | 58.93 |
| CDX93914 | Canola | nucleus | 62.33 | 57.64 |
| Bra040444.1-P | Field mustard | plastid | 61.67 | 57.61 |
| CDY53717 | Canola | nucleus | 62.11 | 57.43 |
| AT3G63300.1 | Thale cress | plastid | 63.0 | 57.43 |
| CDY46598 | Canola | mitochondrion | 59.69 | 56.11 |
| CDX96925 | Canola | plastid | 60.13 | 55.71 |
| CDY36868 | Canola | nucleus | 27.75 | 54.78 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 32.38 | 43.88 |
| GSMUA_Achr10P... | Banana | nucleus | 37.67 | 42.54 |
| GSMUA_Achr11P... | Banana | nucleus | 33.7 | 38.64 |
| GSMUA_Achr4P02070_001 | Banana | cytosol | 24.45 | 28.61 |
| GSMUA_Achr10P... | Banana | cytosol | 23.13 | 27.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P02990_001 | EnsemblPlants:GSMUA_Achr5T02990_001 | EnsemblPlantsGene:GSMUA_Achr5G02990_001 | InterPro:DUF828 | InterPro:PH_pln | ncoils:Coil |
| PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 | PFAM:PF05703 | PFAM:PF08458 | SEG:seg | UniParc:UPI000294DADC |
| UniProt:M0SV78 | MapMan:35.1 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G02990_001]
Coordinates
chr5:+:2051892..2054810
Molecular Weight (calculated)
48473.7 Da
IEP (calculated)
9.209
GRAVY (calculated)
-0.340
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEAGEPWRS ELQRPPEPTK DPMEFLSRSW AASALEVSKA LAPPPPPPPP QPAAIPEDAA AEVEELGVAA AVAGNTFSFA SSATSQLVME RIMSQSEVAP
101: LTSGRLSHSS GPLNGGGSLS DSPPVSPSDM DDVKFCGAGN APKAQPYRGT SKTVGRWLKD RKEKKKEETR AQNAQLHAAI SVAGVAAAVA AIAAATAAAS
201: GSGKDDRAAR TDMAVASAAT LVAAQCVEAA ESMGAEREHL ASVVSSAVSV RTPGDIVTLT AAAATALRGA ATLKARALKE VWNIAAVIPV EKGGSANHTN
301: HRRRSKQEKE LDSNSSSFSD ELVPEENFLG LCSQELLARG TELLKRTRKG ALHWKIVSVY INKMGQVMIK MKSRHVAGTI TKKKKNVVVD VCKDIQAWPG
401: RHLLEGGEQR CYFGLRTAEQ RVIEFECRSR REYDMWTQGV SRLLNIVNEK KHVA
101: LTSGRLSHSS GPLNGGGSLS DSPPVSPSDM DDVKFCGAGN APKAQPYRGT SKTVGRWLKD RKEKKKEETR AQNAQLHAAI SVAGVAAAVA AIAAATAAAS
201: GSGKDDRAAR TDMAVASAAT LVAAQCVEAA ESMGAEREHL ASVVSSAVSV RTPGDIVTLT AAAATALRGA ATLKARALKE VWNIAAVIPV EKGGSANHTN
301: HRRRSKQEKE LDSNSSSFSD ELVPEENFLG LCSQELLARG TELLKRTRKG ALHWKIVSVY INKMGQVMIK MKSRHVAGTI TKKKKNVVVD VCKDIQAWPG
401: RHLLEGGEQR CYFGLRTAEQ RVIEFECRSR REYDMWTQGV SRLLNIVNEK KHVA
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.