Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93914 | Canola | nucleus | 87.35 | 88.59 |
| Bra040444.1-P | Field mustard | plastid | 86.14 | 88.27 |
| CDY53717 | Canola | nucleus | 86.95 | 88.19 |
| KRH67258 | Soybean | nucleus | 52.01 | 67.8 |
| KRG95576 | Soybean | nucleus | 62.25 | 63.92 |
| KRH71381 | Soybean | nucleus | 61.04 | 63.2 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 57.43 | 63.0 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 60.24 | 62.76 |
| KRH32056 | Soybean | nucleus | 60.44 | 62.58 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 45.98 | 62.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.83 | 62.33 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 55.62 | 62.25 |
| PGSC0003DMT400049811 | Potato | plastid | 59.44 | 61.28 |
| Solyc09g065590.2.1 | Tomato | plastid | 59.84 | 61.19 |
| AT5G43870.1 | Thale cress | plastid | 54.22 | 59.6 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 56.83 | 59.58 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 54.62 | 59.26 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 54.82 | 58.84 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 54.62 | 58.75 |
| AT3G22810.1 | Thale cress | cytosol | 55.22 | 58.26 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 54.22 | 58.19 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 56.02 | 57.17 |
| Zm00001d033283_P001 | Maize | cytosol | 53.61 | 56.57 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 53.01 | 56.29 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 53.21 | 56.26 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 52.81 | 56.08 |
| KXG37970 | Sorghum | cytosol | 53.01 | 56.05 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 52.81 | 55.96 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 10.84 | 55.67 |
| Zm00001d030661_P001 | Maize | cytosol | 51.61 | 55.63 |
| Os03t0635800-01 | Rice | nucleus | 41.97 | 55.29 |
| Os12t0604200-00 | Rice | nucleus | 39.76 | 53.37 |
| AT4G32780.2 | Thale cress | cytosol | 32.13 | 37.56 |
| AT4G17350.1 | Thale cress | cytosol | 27.31 | 33.58 |
| AT5G47440.1 | Thale cress | nucleus | 26.31 | 32.27 |
| AT5G57770.1 | Thale cress | cytosol | 25.1 | 30.79 |
| AT4G16670.1 | Thale cress | cytosol | 24.9 | 28.9 |
Protein Annotations
| MapMan:35.1 | EntrezGene:825505 | ProteinID:AEE80464.1 | ArrayExpress:AT3G63300 | EnsemblPlantsGene:AT3G63300 | RefSeq:AT3G63300 |
| TAIR:AT3G63300 | RefSeq:AT3G63300-TAIR-G | EnsemblPlants:AT3G63300.1 | TAIR:AT3G63300.1 | EMBL:AY062506 | EMBL:BT002092 |
| ProteinID:CAB86431.1 | InterPro:DUF828 | Symbol:FKD1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009734 | GO:GO:0009987 | GO:GO:0010087 | GO:GO:0010305 | RefSeq:NP_191889.2 | PFAM:PF05703 |
| PFAM:PF08458 | InterPro:PH_pln | PO:PO:0000036 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008015 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020003 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 | UniProt:Q8W4K5 | UniParc:UPI00000AC210 |
| SEG:seg | : | : | : | : | : |
Description
VABVAN3-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K5]
Coordinates
chr3:+:23384988..23387842
Molecular Weight (calculated)
53338.1 Da
IEP (calculated)
9.781
GRAVY (calculated)
-0.406
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MERELRRPNP INSSRRPEIF SSGGSSTQLP ESPRGPMEFL SRSWSVSALE VSRALHTAKS ASATNRPPSS INTPIPEETL NPEKEECPPE NSTSVSSQFS
101: FAASATSQLV LERIMSQSEV SPLTSGRLSH SSGPLNGGGS FTETDSPPIS PSDEFDDVIK YFRTHNTIHP LFSGTGGSRG TTGNGSNTPM AGTGPKTVGR
201: WLKDRKEKKK EETRTQNAQV HAAVSVAAVA SAVAAVAAAT AASSPGKNEQ MARIDMAMAS AAALVAAQCV EAAEIMGADR DHLTSVVSSA VNVKSHDDIV
301: TLTAAAATAL RGAATLKARA LKEVWNIAAV LPAEKGASSA LCGQVDTKHS DSSFSGELPV AGEDFLGVCN QELLAKGTEL LKRTRGGELH WKIVSVYINK
401: AGQAVLKMKS KHVGGTFTKK KKHMVLEVRK DIPAWAGRDL FNGDKHHYFG LKTETKRVIE FECRNQREYE IWTQGVSRLL AIAAEKKQKS SMSKWMAP
101: FAASATSQLV LERIMSQSEV SPLTSGRLSH SSGPLNGGGS FTETDSPPIS PSDEFDDVIK YFRTHNTIHP LFSGTGGSRG TTGNGSNTPM AGTGPKTVGR
201: WLKDRKEKKK EETRTQNAQV HAAVSVAAVA SAVAAVAAAT AASSPGKNEQ MARIDMAMAS AAALVAAQCV EAAEIMGADR DHLTSVVSSA VNVKSHDDIV
301: TLTAAAATAL RGAATLKARA LKEVWNIAAV LPAEKGASSA LCGQVDTKHS DSSFSGELPV AGEDFLGVCN QELLAKGTEL LKRTRGGELH WKIVSVYINK
401: AGQAVLKMKS KHVGGTFTKK KKHMVLEVRK DIPAWAGRDL FNGDKHHYFG LKTETKRVIE FECRNQREYE IWTQGVSRLL AIAAEKKQKS SMSKWMAP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.