Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | EER99172 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | OQU80812 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033283_P001 | Maize | cytosol | 92.78 | 92.58 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 90.02 | 90.41 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 84.71 | 86.93 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 85.35 | 86.64 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 84.93 | 86.39 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 84.93 | 86.21 |
| Os03t0635800-01 | Rice | nucleus | 67.3 | 83.86 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 75.58 | 72.95 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 70.06 | 72.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.58 | 71.15 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 66.45 | 70.34 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 53.93 | 69.21 |
| Os12t0604200-00 | Rice | nucleus | 52.87 | 67.12 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 64.33 | 65.73 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 13.16 | 63.92 |
| KRH67258 | Soybean | nucleus | 51.38 | 63.35 |
| KRG91356 | Soybean | cytosol | 63.69 | 63.03 |
| KRH35470 | Soybean | nucleus | 63.06 | 62.4 |
| PGSC0003DMT400016521 | Potato | nucleus | 61.57 | 62.23 |
| Solyc09g082580.2.1 | Tomato | cytosol | 61.36 | 62.15 |
| KRH69115 | Soybean | nucleus | 64.12 | 62.14 |
| KRH31661 | Soybean | nucleus | 63.48 | 61.9 |
| CDY36869 | Canola | nucleus, plastid | 22.29 | 60.34 |
| Bra036892.1-P | Field mustard | nucleus | 59.45 | 59.83 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 58.81 | 59.57 |
| Bra039719.1-P | Field mustard | nucleus | 58.39 | 59.14 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 53.29 | 59.06 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 59.45 | 58.95 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 59.45 | 58.58 |
| CDY16256 | Canola | cytosol | 49.68 | 58.5 |
| CDY29764 | Canola | nucleus | 54.99 | 58.47 |
| AT3G22810.1 | Thale cress | cytosol | 58.17 | 58.05 |
| CDX94730 | Canola | cytosol | 54.99 | 57.68 |
| CDY22328 | Canola | plastid | 54.99 | 57.43 |
| CDY14898 | Canola | cytosol | 54.56 | 56.98 |
| AT5G43870.1 | Thale cress | plastid | 54.78 | 56.95 |
| Bra036001.1-P | Field mustard | nucleus | 54.35 | 56.76 |
| KRG95576 | Soybean | nucleus | 58.17 | 56.49 |
| KRH32056 | Soybean | nucleus | 57.54 | 56.34 |
| PGSC0003DMT400049811 | Potato | plastid | 57.11 | 55.69 |
| KRH71381 | Soybean | nucleus | 56.69 | 55.51 |
| Solyc09g065590.2.1 | Tomato | plastid | 57.32 | 55.44 |
| Bra023803.1-P | Field mustard | cytosol | 53.72 | 55.0 |
| Bra040444.1-P | Field mustard | plastid | 55.41 | 53.7 |
| CDX93914 | Canola | nucleus | 55.84 | 53.56 |
| CDY53717 | Canola | nucleus | 55.63 | 53.36 |
| AT3G63300.1 | Thale cress | plastid | 56.05 | 53.01 |
| CDX96925 | Canola | plastid | 54.56 | 52.45 |
| CDY46598 | Canola | mitochondrion | 53.72 | 52.38 |
| CDY36868 | Canola | nucleus | 24.84 | 50.87 |
| OQU86061 | Sorghum | cytosol | 34.18 | 37.7 |
| KXG31087 | Sorghum | nucleus | 31.42 | 34.66 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 29.94 | 34.31 |
| OQU81872 | Sorghum | cytosol | 24.63 | 28.78 |
Protein Annotations
| EnsemblPlants:KXG37970 | EnsemblPlantsGene:SORBI_3001G160200 | EntrezGene:8062238 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 |
| PANTHER:PTHR31351:SF4 | PFAM:PF05703 | PFAM:PF08458 | ProteinID:KXG37970 | ProteinID:KXG37970.1 | SEG:seg |
| UniParc:UPI0003C70934 | UniProt:A0A1B6QJ78 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:13149779..13157433
Molecular Weight (calculated)
49463.8 Da
IEP (calculated)
9.714
GRAVY (calculated)
-0.241
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPRARTSA VAAGELRPPE PPLDPLEFLS RSWSASAGRA FAPHPPPTPP PAASPIAEDA ACELDDGAVV CGVSAAAASG GSSFSFASAA TSQLIMERIL
101: AQSQEVAPLT SGRLSHSSGP LTGGGSLSDS PPVSPEIDDA KYCRAVSTPK PQAYRAGNKT VGRWLKDRKE KKKEETRAHN AQVHAAVSVA AVAAAVAAVA
201: AATAAASGSG KDDRAARTDM AVASAATLVA AQCVEVAESM GAEREHLEAV VGSAVNVRTP GDIVTVTAAA ATALRGAATL KARALKEVWN IAAVIPVEKG
301: GGVGGGGGGH HQKHGAPKQQ QHHHRKLESN GSSISDVSLE EENNFLGICS QELLARGTEL LKRTRKGALH WKVVSVYINR MGLVMVKMKS RHVAGTITKK
401: KKSVVIDVCR DVAAWPGRHL LEDGEHRRYF GLRTAEHRVI EFECTSQREY EMWTKGVARL LSIAAERKRL A
101: AQSQEVAPLT SGRLSHSSGP LTGGGSLSDS PPVSPEIDDA KYCRAVSTPK PQAYRAGNKT VGRWLKDRKE KKKEETRAHN AQVHAAVSVA AVAAAVAAVA
201: AATAAASGSG KDDRAARTDM AVASAATLVA AQCVEVAESM GAEREHLEAV VGSAVNVRTP GDIVTVTAAA ATALRGAATL KARALKEVWN IAAVIPVEKG
301: GGVGGGGGGH HQKHGAPKQQ QHHHRKLESN GSSISDVSLE EENNFLGICS QELLARGTEL LKRTRKGALH WKVVSVYINR MGLVMVKMKS RHVAGTITKK
401: KKSVVIDVCR DVAAWPGRHL LEDGEHRRYF GLRTAEHRVI EFECTSQREY EMWTKGVARL LSIAAERKRL A
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.