CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051361_P001	Maize	plastid	86.89	86.48
TraesCS6A01G250400.1	Wheat	cytosol	68.38	75.84
TraesCS6B01G275000.1	Wheat	cytosol	68.38	75.65
TraesCS6D01G232200.2	Wheat	cytosol	69.09	75.64
HORVU0Hr1G032140.1	Barley	cytosol	67.92	74.36
HORVU0Hr1G027000.1	Barley	cytosol	67.92	74.36
HORVU6Hr1G062990.1	Barley	cytosol	68.38	73.18
EER94492	Sorghum	cytosol, endoplasmic reticulum, nucleus	48.71	50.61
KRH28119	Soybean	nucleus	40.52	44.25
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	39.58	43.22
CDY64500	Canola	cytosol	40.75	43.18
AT4G17350.1	Thale cress	cytosol	40.75	42.96
CDY65120	Canola	cytosol	40.52	42.93
Bra026246.1-P	Field mustard	nucleus	40.28	42.68
CDY09634	Canola	nucleus	40.75	42.54
KRH04152	Soybean	nucleus	38.88	42.24
KRH57434	Soybean	nucleus	38.41	41.62
PGSC0003DMT400012161	Potato	nucleus	36.77	40.26
CDY59298	Canola	nucleus	38.17	40.15
CDX77767	Canola	nucleus	38.17	40.15
AT5G47440.1	Thale cress	nucleus	38.17	40.15
Solyc08g078500.2.1	Tomato	cytosol	36.53	40.0
Bra024944.1-P	Field mustard	cytosol	37.7	39.75
AT4G16670.1	Thale cress	cytosol	37.7	37.53
CDY32269	Canola	cytosol	33.02	37.3
CDY40515	Canola	cytosol	37.94	36.9
Bra038497.1-P	Field mustard	nucleus	37.24	36.89
KXG37970	Sorghum	cytosol	34.66	31.42
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	34.89	30.53
OQU86061	Sorghum	cytosol	30.21	30.21
OQU81872	Sorghum	cytosol	22.72	24.07

Protein Annotations

EnsemblPlants:KXG31087	EnsemblPlantsGene:SORBI_3004G295200	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF2
PFAM:PF05703	PFAM:PF08458	ProteinID:KXG31087	ProteinID:KXG31087.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0007F1B8BC	UniProt:A0A194YSB8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:63507948..63509980

Molecular Weight (calculated)

45611.2 Da

IEP (calculated)

9.459

GRAVY (calculated)

-0.263

Length

427 amino acids

Sequence
(BLAST)

001: MRHEEQCDTN YGQGSGRRGG EEELKMEAHL LMMRTKRRDH LLLTDGGCAG AAGALAVQSP QMPMEPMEFL SRSWSVSASE ISKVLAAGGV GARRSSNFVV
101: DRLSGMLVPE TLALAAAASG TNISPRKRQT LRSRSAISAH QVHHTVQAIG KWFHHWDASS SKVDKARAER ARVHAAVSVA SVAAAVAAVA GTASAEMDDI
201: DGARMESALA SATQLLASHC VEVAELAGAD HDQVASAVEA AVDVRSPGDL LTLTAAAATA LRGAAAMRHR AQREARSRAA VAPYEKTGGS CRADVWCKEG
301: ALLERNRKGA LHWKQVAVYI NKKSQVMVKL KSEHIGGAFS KKKKGVVYGV YDDIPAWPAH EGGGVQSSAP ETCHFGLRTA QGLLEFQCER RAQRQEWVEA
401: VKNLIRQVAG GTAQLEHSFE SLRLSAS

Best Arabidopsis Sequence Match ( AT4G17350.1 )
(BLAST)

001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT

Arabidopsis Description

At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.