CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65120	Canola	cytosol	96.77	96.77
AT4G17350.1	Thale cress	cytosol	90.07	89.63
CDY09634	Canola	nucleus	89.58	88.26
CDX77767	Canola	nucleus	72.46	71.92
CDY59298	Canola	nucleus	72.21	71.67
KRH04152	Soybean	nucleus	55.83	57.25
KRH28119	Soybean	nucleus	55.09	56.78
KRH57434	Soybean	nucleus	54.09	55.33
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	51.86	53.45
PGSC0003DMT400012161	Potato	nucleus	51.61	53.33
Solyc08g078500.2.1	Tomato	cytosol	51.36	53.08
GSMUA_Achr8P11040_001	Banana	cytosol	40.69	48.96
GSMUA_Achr11P...	Banana	nucleus	47.15	47.98
Os10t0560000-01	Rice	cytosol	43.42	46.17
HORVU0Hr1G032140.1	Barley	cytosol	43.92	45.38
HORVU0Hr1G027000.1	Barley	cytosol	43.92	45.38
TraesCS6A01G250400.1	Wheat	cytosol	43.18	45.19
TraesCS6B01G275000.1	Wheat	cytosol	43.18	45.08
HORVU6Hr1G062990.1	Barley	cytosol	43.92	44.36
TraesCS6D01G232200.2	Wheat	cytosol	42.68	44.1
Zm00001d000175_P001	Maize	plastid	42.93	43.58
CDY40515	Canola	cytosol	47.39	43.51
CDY32269	Canola	cytosol	40.2	42.86
TraesCS1A01G220700.1	Wheat	cytosol	40.69	42.71
HORVU1Hr1G056150.4	Barley	cytosol, nucleus	40.45	42.56
TraesCS1B01G234200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	40.2	42.19
EER94492	Sorghum	cytosol, endoplasmic reticulum, nucleus	42.18	41.36
TraesCS3A01G147100.2	Wheat	cytosol, endoplasmic reticulum, nucleus	38.96	40.78
KXG31087	Sorghum	nucleus	43.18	40.75
TraesCS5A01G540500.1	Wheat	cytosol	37.47	40.7
TraesCS4D01G363600.1	Wheat	mitochondrion, nucleus	39.95	40.66
Zm00001d029886_P001	Maize	vacuole	39.7	40.4
TraesCS5A01G540300.1	Wheat	extracellular	40.2	39.71
TraesCS1D01G222200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	40.69	39.52
Zm00001d051361_P001	Maize	plastid	41.94	39.39
TraesCS4B01G373700.1	Wheat	nucleus	39.21	39.3
CDY36869	Canola	nucleus, plastid	13.4	31.03
CDY29764	Canola	nucleus	32.75	29.8
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	34.24	29.68
CDY14898	Canola	cytosol	31.76	28.38
CDX68890	Canola	cytosol	30.02	28.34
CDX75286	Canola	cytosol	30.02	28.34
CDX94730	Canola	cytosol	31.51	28.29
CDY22328	Canola	plastid	31.51	28.16
CDY46598	Canola	mitochondrion	33.0	27.54
CDY16256	Canola	cytosol	27.05	27.25
CDX93914	Canola	nucleus	32.01	26.27
CDY53717	Canola	nucleus	31.76	26.07
CDX96925	Canola	plastid	31.27	25.71
CDY36868	Canola	nucleus	12.41	21.74
CDY02766	Canola	cytosol	22.08	21.5
CDY51283	Canola	cytosol	21.34	20.98
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	21.09	20.68

Protein Annotations

EnsemblPlants:CDY64500	EnsemblPlantsGene:GSBRNA2T00042295001	InterPro:DUF828	InterPro:IPR001849	InterPro:PH_domain	InterPro:PH_pln
PANTHER:PTHR31351	PANTHER:PTHR31351:SF2	PFAM:PF05703	PFAM:PF08458	ProteinID:CDY64500	ProteinID:CDY64500.1
SEG:seg	SMART:SM00233	UniParc:UPI00006C60A6	UniProt:A0A078JFP2	MapMan:35.1	:

Description

BnaC01g41700DBnaC01g41700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFP2]

Coordinates

chrLK034476:+:13387..15419

Molecular Weight (calculated)

44535.9 Da

IEP (calculated)

9.759

GRAVY (calculated)

-0.488

Length

403 amino acids

Sequence
(BLAST)

001: MERGGFYPDW KDTSSSLFGS ENMEEELEEE LFSSIPQPQT PKEPMEFLSR SWSLSTSEIA KALALKHRQQ QEQRCVAQNN THVLFPDAAA AAAHPLMTGK
101: IMNSFGTRRA GTLSKWFHHH REHSSSSNTT NYLKKKDKAR VENAHVHSAV SIAALAAGVA SVTSASNCKG SSSKMTLALG SATELLASHC VEMAERAGAD
201: HARVASTVRS SVDIHSPGDL MTLTAAAATA LRGEAALKAR QPKEARKNAA ITPFERSFSN SHWPANFQFR LEEPNLPLEG ELMQCARNGV QRTKRVCVYI
301: NKKSQVIIKL KSKHVGGAFS KKIKCIVYGV CDEKSAWPYR KERENSEEVY FGLKTGQGLL EFKCKSKVHK QRWVDGVESL LRQVNCFEAA KCSLGSLSLT
401: NHR

Best Arabidopsis Sequence Match ( AT4G17350.1 )
(BLAST)

001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT

Arabidopsis Description

At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.