CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65120	Canola	cytosol	89.0	90.32
AT4G17350.1	Thale cress	cytosol	89.0	89.88
CDY64500	Canola	cytosol	88.26	89.58
CDX77767	Canola	nucleus	71.15	71.67
CDY59298	Canola	nucleus	70.17	70.69
KRH04152	Soybean	nucleus	55.01	57.25
KRH28119	Soybean	nucleus	54.52	57.03
KRH57434	Soybean	nucleus	53.06	55.08
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	52.57	54.99
PGSC0003DMT400012161	Potato	nucleus	51.59	54.1
Solyc08g078500.2.1	Tomato	cytosol	50.86	53.33
GSMUA_Achr8P11040_001	Banana	cytosol	40.59	49.55
Os10t0560000-01	Rice	cytosol	43.77	47.23
GSMUA_Achr11P...	Banana	nucleus	45.48	46.97
TraesCS6A01G250400.1	Wheat	cytosol	42.54	45.19
HORVU0Hr1G032140.1	Barley	cytosol	42.79	44.87
HORVU0Hr1G027000.1	Barley	cytosol	42.79	44.87
TraesCS6B01G275000.1	Wheat	cytosol	42.3	44.82
TraesCS1A01G220700.1	Wheat	cytosol	42.05	44.79
TraesCS6D01G232200.2	Wheat	cytosol	42.05	44.1
Zm00001d000175_P001	Maize	plastid	42.79	44.08
HORVU1Hr1G056150.4	Barley	cytosol, nucleus	41.08	43.86
HORVU6Hr1G062990.1	Barley	cytosol	42.79	43.86
TraesCS1B01G234200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	41.08	43.75
TraesCS3A01G147100.2	Wheat	cytosol, endoplasmic reticulum, nucleus	40.83	43.38
EER94492	Sorghum	cytosol, endoplasmic reticulum, nucleus	42.54	42.34
CDY40515	Canola	cytosol	45.23	42.14
TraesCS4D01G363600.1	Wheat	mitochondrion, nucleus	40.59	41.92
TraesCS5A01G540500.1	Wheat	cytosol	37.9	41.78
Zm00001d029886_P001	Maize	vacuole	40.34	41.67
CDY32269	Canola	cytosol	37.9	41.01
TraesCS1D01G222200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	41.56	40.96
TraesCS5A01G540300.1	Wheat	extracellular	40.83	40.93
TraesCS4B01G373700.1	Wheat	nucleus	40.1	40.8
KXG31087	Sorghum	nucleus	42.54	40.75
Zm00001d051361_P001	Maize	plastid	40.83	38.93
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	34.23	30.11
CDY29764	Canola	nucleus	32.52	30.02
CDY36869	Canola	nucleus, plastid	12.71	29.89
CDX68890	Canola	cytosol	30.32	29.04
CDX75286	Canola	cytosol	30.32	29.04
CDY22328	Canola	plastid	31.78	28.82
CDY46598	Canola	mitochondrion	33.99	28.78
CDX94730	Canola	cytosol	31.3	28.51
CDY14898	Canola	cytosol	31.3	28.38
CDY16256	Canola	cytosol	27.14	27.75
CDX93914	Canola	nucleus	32.52	27.09
CDY53717	Canola	nucleus	32.27	26.88
CDX96925	Canola	plastid	31.3	26.12
CDY36868	Canola	nucleus	12.47	22.17
CDY02766	Canola	cytosol	22.25	21.98
CDY51283	Canola	cytosol	21.76	21.71
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	21.52	21.41

Protein Annotations

EnsemblPlants:CDY09634	EnsemblPlantsGene:GSBRNA2T00031279001	InterPro:DUF828	InterPro:IPR001849	InterPro:PH_domain	InterPro:PH_pln
PANTHER:PTHR31351	PANTHER:PTHR31351:SF2	PFAM:PF05703	PFAM:PF08458	ProteinID:CDY09634	ProteinID:CDY09634.1
SEG:seg	SMART:SM00233	UniParc:UPI0004EDC383	UniProt:A0A078F9F8	MapMan:35.1	:

Description

BnaC07g34270DBnaC07g34270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9F8]

Coordinates

chrLK031998:-:122975..124620

Molecular Weight (calculated)

44928.3 Da

IEP (calculated)

9.824

GRAVY (calculated)

-0.492

Length

409 amino acids

Sequence
(BLAST)

001: MESGGFYSDW KDTSSSLFGS ENMDEDRVLR AEELFSSIPQ PQTPKEPMEF LSRSWSLSTS EIAKALALKH RQQQEQDQQF CVAQNTPPVL FPDAAADPLV
101: AGKIMNSFGT RKGGTLSKWF HHHKEHSSSS SSNTTNYLKK KDKARVENAH VHSAVSIAAL AAGVASVTSA SNSKGSSSKM ALALASATEL LASHCVEMAE
201: RAGADRARVA STVRSSVDIH SPGDLMTLTA AAATALRGEA ALKARQPKEA RKNASIAPFE RSFSDSHWPS NIQFRLEEPN LPLEGELMQC SRHGVQRSKR
301: VCVYVNKKSQ VMIKLKSKHV GGAFSKKIKS VVYGVCDEKS AWPYRKEREN NSEEVYFGLK TGQGLLEFKC KNKIHKQRWV DGVQCLLRQV NCFEAAKCSL
401: GSLSLTSKT

Best Arabidopsis Sequence Match ( AT4G17350.1 )
(BLAST)

001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT

Arabidopsis Description

At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.