Factsheet for TraesCS5A01G540300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 2
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G363600.1	Wheat	mitochondrion, nucleus	91.18	93.94
TraesCS4B01G373700.1	Wheat	nucleus	88.97	90.3
TraesCS5A01G540500.1	Wheat	cytosol	80.88	88.95
TraesCS1A01G220700.1	Wheat	cytosol	59.07	62.76
TraesCS3A01G147100.2	Wheat	cytosol, endoplasmic reticulum, nucleus	58.33	61.82
GSMUA_Achr8P11040_001	Banana	cytosol	48.53	59.1
TraesCS6A01G250400.1	Wheat	cytosol	48.77	51.69
GSMUA_Achr11P...	Banana	nucleus	50.0	51.52
KRH28119	Soybean	nucleus	39.46	41.18
PGSC0003DMT400012161	Potato	nucleus	39.22	41.03
CDY09634	Canola	nucleus	40.93	40.83
CDY65120	Canola	cytosol	39.95	40.45
Solyc08g078500.2.1	Tomato	cytosol	38.48	40.26
AT4G17350.1	Thale cress	cytosol	39.95	40.25
KRH04152	Soybean	nucleus	38.73	40.2
CDY64500	Canola	cytosol	39.71	40.2
Bra026246.1-P	Field mustard	nucleus	39.71	40.2
KRH57434	Soybean	nucleus	38.48	39.85
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	37.99	39.64
AT5G47440.1	Thale cress	nucleus	37.5	37.68
Bra024944.1-P	Field mustard	cytosol	36.52	36.79
CDX77767	Canola	nucleus	36.52	36.7
CDY59298	Canola	nucleus	36.27	36.45
AT4G16670.1	Thale cress	cytosol	37.01	35.2
CDY40515	Canola	cytosol	36.76	34.17
Bra038497.1-P	Field mustard	nucleus	35.29	33.41
CDY32269	Canola	cytosol	30.88	33.33
TraesCS3A01G155500.1	Wheat	cytosol	32.84	31.02
TraesCS5A01G056700.2	Wheat	nucleus	34.31	29.72
TraesCS5A01G377600.1	Wheat	nucleus	33.09	29.41
TraesCS2A01G355900.2	Wheat	cytosol	23.28	22.57

Protein Annotations

EnsemblPlants:TraesCS5A01G540300.1	EnsemblPlantsGene:TraesCS5A01G540300	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF5
PFAM:PF05703	PFAM:PF08458	SEG:seg	SUPFAM:SSF50729	MapMan:35.1	:

Description

No Description!

Coordinates

chr5A:+:697878736..697880549

Molecular Weight (calculated)

44235.0 Da

IEP (calculated)

10.025

GRAVY (calculated)

-0.355

Length

408 amino acids

Sequence
(BLAST)

001: MEMEMERVCK RRPGMPPALL LALHGMDEQM PASSTAAAVP PPQTPVEPME YLSRSWSVSA EEISKALRLK GATKRSFLAP VDTLLPPRTA TIPDTETSSY
101: ELVASPAASV HQLQRQQHLD ATGRSSISCH RHSNSVTRWY FQHKETAKHG RKEKARADLA QAHAMVSVAQ VSAAVAAVTA ATSRDNQDSK IAAAMASATK
201: LLASHCAEAA QLAGAGHEQV SSAVRSAVGV TGPGDLMTLT AAAATALRGT ATLKKRVQRE ARSNASVSPY EKAPLSWSPD IWCKEGKLLK RTRKGDLHKR
301: RVSIYINKRS QVILKLKSKH IGGALSKNNK SVVYGVYSEL PEWTEPGKCL PETCCFGLST AQGLIEFKCE SSTSKQSWVH GVQNLLQQVD VADQVGHRLE
401: TLKLNWCS

Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)

001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.