Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024944.1-P | Field mustard | cytosol | 96.55 | 96.79 |
| CDX77767 | Canola | nucleus | 94.58 | 94.58 |
| AT5G47440.1 | Thale cress | nucleus | 80.79 | 80.79 |
| CDY64500 | Canola | cytosol | 71.67 | 72.21 |
| CDY65120 | Canola | cytosol | 71.43 | 71.96 |
| CDY09634 | Canola | nucleus | 70.69 | 70.17 |
| KRH28119 | Soybean | nucleus | 51.48 | 53.45 |
| KRH04152 | Soybean | nucleus | 49.75 | 51.4 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 49.01 | 50.9 |
| PGSC0003DMT400012161 | Potato | nucleus | 48.77 | 50.77 |
| Solyc08g078500.2.1 | Tomato | cytosol | 48.28 | 50.26 |
| KRH57434 | Soybean | nucleus | 48.28 | 49.75 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 37.44 | 45.37 |
| GSMUA_Achr11P... | Banana | nucleus | 41.87 | 42.93 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 39.9 | 42.08 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 39.66 | 41.71 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 39.9 | 41.54 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 39.66 | 41.28 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 39.66 | 41.28 |
| Os10t0560000-01 | Rice | cytosol | 37.68 | 40.37 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 39.66 | 40.35 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 37.44 | 39.58 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 37.19 | 39.32 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 36.45 | 38.64 |
| Zm00001d000175_P001 | Maize | plastid | 37.68 | 38.54 |
| KXG31087 | Sorghum | nucleus | 40.15 | 38.17 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 37.19 | 38.13 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 35.71 | 37.66 |
| CDY40515 | Canola | cytosol | 40.64 | 37.59 |
| Zm00001d051361_P001 | Maize | plastid | 39.41 | 37.3 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 33.99 | 37.2 |
| Zm00001d029886_P001 | Maize | vacuole | 35.96 | 36.87 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 36.45 | 36.82 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 37.19 | 36.74 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 37.19 | 36.39 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 36.45 | 36.27 |
| CDY32269 | Canola | cytosol | 32.51 | 34.92 |
| CDY36869 | Canola | nucleus, plastid | 12.07 | 28.16 |
| CDY29764 | Canola | nucleus | 30.05 | 27.54 |
| CDY22328 | Canola | plastid | 30.3 | 27.27 |
| CDX94730 | Canola | cytosol | 30.05 | 27.17 |
| CDX68890 | Canola | cytosol | 28.57 | 27.17 |
| CDX75286 | Canola | cytosol | 28.57 | 27.17 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.03 | 27.1 |
| CDY14898 | Canola | cytosol | 30.05 | 27.05 |
| CDY46598 | Canola | mitochondrion | 31.03 | 26.09 |
| CDX96925 | Canola | plastid | 30.05 | 24.9 |
| CDX93914 | Canola | nucleus | 29.8 | 24.64 |
| CDY16256 | Canola | cytosol | 24.14 | 24.5 |
| CDY53717 | Canola | nucleus | 29.56 | 24.44 |
| CDY02766 | Canola | cytosol | 23.89 | 23.43 |
| CDY51283 | Canola | cytosol | 23.65 | 23.41 |
| CDY50798 | Canola | cytosol, endoplasmic reticulum, nucleus | 23.15 | 22.87 |
| CDY36868 | Canola | nucleus | 11.08 | 19.57 |
Protein Annotations
| EnsemblPlants:CDY59298 | EnsemblPlantsGene:GSBRNA2T00025857001 | InterPro:DUF828 | InterPro:IPR001849 | InterPro:PH_domain | InterPro:PH_pln |
| PANTHER:PTHR31351 | PANTHER:PTHR31351:SF2 | PFAM:PF05703 | PFAM:PF08458 | ProteinID:CDY59298 | ProteinID:CDY59298.1 |
| SEG:seg | SMART:SM00233 | UniParc:UPI0004EF1EE0 | UniProt:A0A078J1C3 | MapMan:35.2 | : |
Description
BnaA06g40030DBnaA06g40030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1C3]
Coordinates
chrLK033748:+:20199..21798
Molecular Weight (calculated)
44734.0 Da
IEP (calculated)
9.305
GRAVY (calculated)
-0.506
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRSYLDWN ESSSSLFGSE NLEEELEVVT VRGEEAFYGI AQPQTPRESM KFLSRSWSLS ASEISKALSH KQRQHQSLST VSHNSPNVFF QDSAANPLMA
101: GKIMNSSGKR KSGRLSKWFH QKQHTNPNTM RNPKRKDKAR VERAHVHSAV SIAALAAGLA SVTSEESCGK GSGSMMTLAL ASATELLASH CIEMAEQAGA
201: DRECVAATVR SSIDIHKPSD LTTLTAAAAT ALRGEAALKA RQPKEARKNA TITPCERSFS DSSWTANCQF RFDEPNLPLE GDLVQCAQNA GAHRLKRVCV
301: YINNKSQVMI KLKSKHIGGT FSKKIKCVVY GVCDEISAWP YSKDRENSED VYFGLKTGQG LLEFKCKSKT QKQRWVAGIQ STLRQVTCLE ADKCSLESLS
401: LSDRMR
101: GKIMNSSGKR KSGRLSKWFH QKQHTNPNTM RNPKRKDKAR VERAHVHSAV SIAALAAGLA SVTSEESCGK GSGSMMTLAL ASATELLASH CIEMAEQAGA
201: DRECVAATVR SSIDIHKPSD LTTLTAAAAT ALRGEAALKA RQPKEARKNA TITPCERSFS DSSWTANCQF RFDEPNLPLE GDLVQCAQNA GAHRLKRVCV
301: YINNKSQVMI KLKSKHIGGT FSKKIKCVVY GVCDEISAWP YSKDRENSED VYFGLKTGQG LLEFKCKSKT QKQRWVAGIQ STLRQVTCLE ADKCSLESLS
401: LSDRMR
001: MEGGFYSDWN DSSSSLFGSE NPEHELEEGN VRSEEIVSQI PQPQTPREPM KFLSRSWSLS ASEISKALAQ KQRQQRDLFS VSQNSPRGFF QDVAADPLMA
101: ENIMNSAGTR RSGRLSKWFH HKQHTNPSTM RIPRKKDKAR VQKAHVHSAV SIAALAAGLA SVTSEESCSK ESCSMMALAL ASATELLASH CIDMAEQAGA
201: DHTCVASTVR SSVDIHSPGD LMTLTAAAAT ALRGEAALKV RQPKESRKNA TITPCERSFS DSHWPGENCQ FRLEEPNLPL EGELVQCARN GLQRNKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEISAWP CRKERENSEE VYFGLKTGQG LLEFKCKSKI QKQRWVAGIQ SNLRLVSCLE AAKCSLESLS
401: LSNRMR
101: ENIMNSAGTR RSGRLSKWFH HKQHTNPSTM RIPRKKDKAR VQKAHVHSAV SIAALAAGLA SVTSEESCSK ESCSMMALAL ASATELLASH CIDMAEQAGA
201: DHTCVASTVR SSVDIHSPGD LMTLTAAAAT ALRGEAALKV RQPKESRKNA TITPCERSFS DSHWPGENCQ FRLEEPNLPL EGELVQCARN GLQRNKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEISAWP CRKERENSEE VYFGLKTGQG LLEFKCKSKI QKQRWVAGIQ SNLRLVSCLE AAKCSLESLS
401: LSNRMR
Arabidopsis Description
At5g47440 [Source:UniProtKB/TrEMBL;Acc:Q9FGL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.