Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G032140.1 | Barley | cytosol | 96.74 | 98.97 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 96.74 | 98.97 |
| TraesCS6A01G250400.1 | Wheat | cytosol | 92.23 | 95.58 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 91.48 | 94.56 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 91.48 | 93.59 |
| KXG31087 | Sorghum | nucleus | 73.18 | 68.38 |
| Zm00001d051361_P001 | Maize | plastid | 72.18 | 67.13 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 50.38 | 52.48 |
| KRH28119 | Soybean | nucleus | 43.11 | 43.99 |
| CDY64500 | Canola | cytosol | 44.36 | 43.92 |
| CDY65120 | Canola | cytosol | 43.86 | 43.42 |
| KRH04152 | Soybean | nucleus | 42.61 | 43.26 |
| Bra026246.1-P | Field mustard | nucleus | 43.61 | 43.18 |
| Solyc08g078500.2.1 | Tomato | cytosol | 42.11 | 43.08 |
| PGSC0003DMT400012161 | Potato | nucleus | 42.11 | 43.08 |
| AT4G17350.1 | Thale cress | cytosol | 43.61 | 42.96 |
| CDY09634 | Canola | nucleus | 43.86 | 42.79 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 41.85 | 42.71 |
| KRH57434 | Soybean | nucleus | 41.85 | 42.39 |
| AT5G47440.1 | Thale cress | nucleus | 41.35 | 40.64 |
| CDX77767 | Canola | nucleus | 40.85 | 40.15 |
| Bra024944.1-P | Field mustard | cytosol | 40.35 | 39.75 |
| CDY59298 | Canola | nucleus | 40.35 | 39.66 |
| Bra038497.1-P | Field mustard | nucleus | 39.35 | 36.43 |
| AT4G16670.1 | Thale cress | cytosol | 39.1 | 36.36 |
| CDY40515 | Canola | cytosol | 39.6 | 35.99 |
| CDY32269 | Canola | cytosol | 34.09 | 35.98 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 37.34 | 32.11 |
| HORVU3Hr1G031590.6 | Barley | cytosol, nucleus, plastid | 31.83 | 18.65 |
Protein Annotations
| EMBL:AK375956 | EnsemblPlants:HORVU6Hr1G062990.1 | EnsemblPlantsGene:HORVU6Hr1G062990 | InterPro:DUF828 | InterPro:IPR001849 | InterPro:PH_domain |
| InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF2 | PFAM:PF05703 | PFAM:PF08458 | PFscan:PS50003 |
| SEG:seg | SMART:SM00233 | UniParc:UPI000B4861E0 | UniProt:A0A287UEQ5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr6H:+:423201518..423203084
Molecular Weight (calculated)
42694.8 Da
IEP (calculated)
10.494
GRAVY (calculated)
-0.352
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: SATASERCNR QVRMEGYLLG RTKRRDHLLL MDSAGGAVQP PQTPVEPMEF LSRSWSVSAS DLSKVLAVGG GRRSSNFVVD RLSGMLMPET LALAAASGTN
101: SPKKRPCRSR SAISGHHHAI GRWFHHKDGG SRVDKARAER ARVHAAVSVA SVAAAVAALA SGAANPEDAE DAKMDAALAS ATQLLASHCI EFAELAGADH
201: DQVASAVEGA VDVRSPGDLM TLTAAAATAL RGATALRQRE QREARSKAAV APFEKAGSCG TDIWCKEGTL LKRSRKGALR WKRVSVYINK RSQVIVKLKS
301: KHIGGAFSKK KRSVVYGVHD DMPAWPPGHE SCGMPDSSAA APEKRHFGLR TAQGLVEFEC ESRVHKQEWV ESVKNLLRQA AGGTAQLEHS FQSLRLSAS
101: SPKKRPCRSR SAISGHHHAI GRWFHHKDGG SRVDKARAER ARVHAAVSVA SVAAAVAALA SGAANPEDAE DAKMDAALAS ATQLLASHCI EFAELAGADH
201: DQVASAVEGA VDVRSPGDLM TLTAAAATAL RGATALRQRE QREARSKAAV APFEKAGSCG TDIWCKEGTL LKRSRKGALR WKRVSVYINK RSQVIVKLKS
301: KHIGGAFSKK KRSVVYGVHD DMPAWPPGHE SCGMPDSSAA APEKRHFGLR TAQGLVEFEC ESRVHKQEWV ESVKNLLRQA AGGTAQLEHS FQSLRLSAS
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.