Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G250400.1 | Wheat | cytosol | 96.37 | 96.62 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 96.37 | 95.38 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 94.56 | 93.59 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 94.56 | 93.59 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 94.56 | 91.48 |
| KXG31087 | Sorghum | nucleus | 75.65 | 68.38 |
| Zm00001d051361_P001 | Maize | plastid | 74.61 | 67.13 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 50.52 | 50.78 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 50.26 | 48.26 |
| KRH28119 | Soybean | nucleus | 45.08 | 44.5 |
| KRH04152 | Soybean | nucleus | 44.04 | 43.26 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 43.78 | 43.22 |
| CDY64500 | Canola | cytosol | 45.08 | 43.18 |
| PGSC0003DMT400012161 | Potato | nucleus | 43.26 | 42.82 |
| AT4G17350.1 | Thale cress | cytosol | 44.82 | 42.72 |
| CDY65120 | Canola | cytosol | 44.56 | 42.68 |
| Solyc08g078500.2.1 | Tomato | cytosol | 43.01 | 42.56 |
| Bra026246.1-P | Field mustard | nucleus | 44.3 | 42.43 |
| KRH57434 | Soybean | nucleus | 43.26 | 42.39 |
| CDY09634 | Canola | nucleus | 44.82 | 42.3 |
| AT5G47440.1 | Thale cress | nucleus | 42.75 | 40.64 |
| CDX77767 | Canola | nucleus | 42.23 | 40.15 |
| Bra024944.1-P | Field mustard | cytosol | 41.71 | 39.75 |
| CDY59298 | Canola | nucleus | 41.71 | 39.66 |
| AT4G16670.1 | Thale cress | cytosol | 41.71 | 37.53 |
| Bra038497.1-P | Field mustard | nucleus | 41.19 | 36.89 |
| CDY40515 | Canola | cytosol | 41.45 | 36.45 |
| CDY32269 | Canola | cytosol | 35.49 | 36.24 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 39.12 | 32.2 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 38.34 | 31.9 |
| TraesCS3B01G182000.2 | Wheat | mitochondrion | 34.2 | 28.14 |
| TraesCS2B01G372200.1 | Wheat | cytosol | 25.91 | 23.75 |
Protein Annotations
Description
No Description!
Coordinates
chr6B:-:497019565..497020904
Molecular Weight (calculated)
41306.4 Da
IEP (calculated)
10.495
GRAVY (calculated)
-0.296
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYLLGRTK RRDHLLLMDS AGAVQSPQTP VEPMEFLSRS WSVSASDLSK VLAVGGGRRS SNFVVDRLSG MLMPEMLALA AASGTNSPKK RTCRSRSAIS
101: AHHRTIGRWF HHKDGGSRVD KARAERARVH AAVSVASVAA AVAALAAGAA NPEDGEGPKM DAALASATQL LASHCIEFAE LAGADHDQVA SAVEGAVDVR
201: SPGDLMTLTA AAATALRGAT ALRLREQREA RSKAAVAPFE KAGSCGADIW CKEGTLLKRS RKGGALRWKR VSVYINKRTQ VIVKLKSKHI GGAFSKKKRS
301: VVYSVHDDMP AWPPGHEPCG MPDSATAASE KRHFGLRTAQ GLVEFECESR MHKQEWVESV KNLLRQAAGG TAQLEHSFES LRLSAS
101: AHHRTIGRWF HHKDGGSRVD KARAERARVH AAVSVASVAA AVAALAAGAA NPEDGEGPKM DAALASATQL LASHCIEFAE LAGADHDQVA SAVEGAVDVR
201: SPGDLMTLTA AAATALRGAT ALRLREQREA RSKAAVAPFE KAGSCGADIW CKEGTLLKRS RKGGALRWKR VSVYINKRTQ VIVKLKSKHI GGAFSKKKRS
301: VVYSVHDDMP AWPPGHEPCG MPDSATAASE KRHFGLRTAQ GLVEFECESR MHKQEWVESV KNLLRQAAGG TAQLEHSFES LRLSAS
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.