Factsheet for TraesCS5B01G060100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G293000.1
TraesCS5B01G292200.1
TraesCS5D01G300300.2
TraesCS7A01G263800.2
TraesCS7B01G161800.1
TraesCS7D01G264700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63300.1	TraesCS5A01G293000.1	AT5G13300.1	19363154
AT3G63300.1	TraesCS5B01G292200.1	AT5G13300.1	19363154
AT3G63300.1	TraesCS5D01G300300.2	AT5G13300.1	19363154
AT3G63300.1	TraesCS7A01G263800.2	AT5G13300.1	19363154
AT3G63300.1	TraesCS7B01G161800.1	AT5G13300.1	19363154
AT3G63300.1	TraesCS7D01G264700.1	AT5G13300.1	19363154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G056700.2	Wheat	nucleus	98.29	97.88
TraesCS5D01G067900.2	Wheat	nucleus	98.08	97.87
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	77.19	74.18
TraesCS5B01G381200.1	Wheat	nucleus	73.35	74.14
Zm00001d030661_P001	Maize	cytosol	72.07	73.16
GSMUA_Achr5P02990_001	Banana	nucleus	66.95	69.16
GSMUA_Achr4P21160_001	Banana	cytosol	14.29	69.07
GSMUA_AchrUn_...	Banana	nucleus	64.39	66.52
GSMUA_Achr7P07730_001	Banana	nucleus	63.11	66.52
GSMUA_Achr4P21170_001	Banana	cytosol	50.96	65.12
VIT_05s0020g04020.t01	Wine grape	nucleus	61.83	62.91
KRH67258	Soybean	nucleus	49.47	60.73
PGSC0003DMT400016521	Potato	nucleus	59.91	60.3
KRG91356	Soybean	cytosol	61.19	60.29
Solyc09g082580.2.1	Tomato	cytosol	59.7	60.22
KRH69115	Soybean	nucleus	62.05	59.88
KRH31661	Soybean	nucleus	61.62	59.83
KRH35470	Soybean	nucleus	60.34	59.45
CDY36869	Canola	nucleus, plastid	21.75	58.62
Bra033702.1-P	Field mustard	cytosol, plastid	52.45	57.88
Bra036892.1-P	Field mustard	nucleus	57.36	57.48
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	56.72	57.2
Bra039719.1-P	Field mustard	nucleus	56.5	56.99
VIT_07s0151g00290.t01	Wine grape	nucleus	58.0	56.9
CDY29764	Canola	nucleus	53.73	56.88
CDX94730	Canola	cytosol	54.37	56.79
CDY14898	Canola	cytosol	54.58	56.76
AT5G43870.1	Thale cress	plastid	54.8	56.73
Bra036001.1-P	Field mustard	nucleus	54.37	56.54
AT4G14740.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	57.14	56.42
CDY16256	Canola	cytosol	47.97	56.25
CDY22328	Canola	plastid	53.94	56.1
AT3G22810.1	Thale cress	cytosol	56.08	55.72
KRH32056	Soybean	nucleus	56.5	55.09
KRH71381	Soybean	nucleus	55.86	54.47
KRG95576	Soybean	nucleus	56.29	54.43
Bra040444.1-P	Field mustard	plastid	55.65	53.7
CDX93914	Canola	nucleus	56.08	53.56
CDY53717	Canola	nucleus	56.08	53.56
Bra023803.1-P	Field mustard	cytosol	52.24	53.26
PGSC0003DMT400049811	Potato	plastid	54.58	53.0
AT3G63300.1	Thale cress	plastid	56.08	52.81
Solyc09g065590.2.1	Tomato	plastid	54.8	52.77
CDX96925	Canola	plastid	53.94	51.63
CDY46598	Canola	mitochondrion	52.24	50.72
CDY36868	Canola	nucleus	23.88	48.7
TraesCS6B01G275000.1	Wheat	cytosol	32.2	39.12
TraesCS1B01G234200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.92	37.76
TraesCS4B01G373700.1	Wheat	nucleus	30.28	35.32
TraesCS3B01G182000.2	Wheat	mitochondrion	33.26	33.26
TraesCS2B01G372200.1	Wheat	cytosol	24.09	26.84

Protein Annotations

EnsemblPlants:TraesCS5B01G060100.2	EnsemblPlantsGene:TraesCS5B01G060100	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF4
PFAM:PF05703	PFAM:PF08458	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5B:-:67035002..67039166

Molecular Weight (calculated)

49397.4 Da

IEP (calculated)

10.122

GRAVY (calculated)

-0.328

Length

469 amino acids

Sequence
(BLAST)

001: MNGSGRASAR GGGDRLPPEP QRDPLEFLSR SWSASVADVS RAFAAAPAAG AIAEDIAGEL DDAASAGTGT GSSFSFASAA TSQLIMDRIM SHSQEVSPLT
101: SGRLSHSSGP LNGGGSFSDS PPVSPDVDDS RMQFCRAVST PKAQPPRGGS KTVGRWLKDK KEKRKEETRA HNAQVHAAVT VAAVAAAVAA AAAATAGSGG
201: KDDRAARTDM AMASAATLVA AQCVEAAESM GAEREHLAAA VGSAVNARTP GDIVTITAAA ATALRGAATL RARVQKEAWN VAAVIPVEKG SMGMGGHSHG
301: HKHGAAQRQL QQQPHHKVQE MGSSNSSSFS DDLPAIDQDE NNFLGICCQE LLARGTELLK RTRKGSLHWK VVSVYINRTG VVMLKLKSRH VAGTITKKKK
401: SVVVDVCRDL AAWPGRHLLE GGEHRRYFGL RTAEHRVIEF ECASQREHDM WTKGVARLLA IVEGRKRFA

Best Arabidopsis Sequence Match ( AT4G14740.1 )
(BLAST)

001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.